CX676018

Overview
NameCX676018
Unique NameCX676018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: YGL4_SCHPO (Uncharacterized protein C216.04c OS=Schizosaccharomyces pombe GN=SPBC216.04c PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.721e-25
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = -2
Query:  186 GTGEYNKLYA-DGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 470
            G G +   +   G + CA C   LYK+ TKF+S CGWPAF++ LPG + R  D      R E  CA CGGHLGH+FKGEG+  PTDERHC+NS S++F
Sbjct:   33 GAGRFTHQFPKQGVFVCAACKELLYKASTKFESHCGWPAFFDNLPGKVKRIEDNSYGMHRVEAVCANCGGHLGHIFKGEGYSNPTDERHCINSASLEF 130          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_LEIXX (Peptide methionine sulfoxide reductase msrB OS=Leifsonia xyli subsp. xyli GN=msrB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.651e-22
Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = -2
Query:  174 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDP--DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 467
            TGE       G Y CA CG  L++S TKFDSGCGWP+FYE + P A+    D      RTE+ CA CG HLGHVF  +GF+TPT +R+C+NS+S+ F P D
Sbjct:   39 TGELLDESRAGVYACAACGAELFRSGTKFDSGCGWPSFYESVRPEAVELLEDTRLGITRTEVRCANCGSHLGHVFP-DGFRTPTGDRYCMNSISLDFQPED 138          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: YCD3_YEAST (Uncharacterized protein YCL033C OS=Saccharomyces cerevisiae GN=YCL033C PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.192e-22
Identity = 54/99 (54.55%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  192 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHLGHVFKGEGFK----TPTDERHCVNSVSI 467
            TG Y      G Y+CA C   LY S  KFD+ CGWPAFYE + PGAI    D      R EI CA CGGHLGHVF+GEG+K     P D RHCVNS S+
Sbjct:   65 TGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGHVFEGEGWKQLLNLPKDTRHCVNSASL 163          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_METTH (Peptide methionine sulfoxide reductase msrB OS=Methanobacterium thermoautotrophicum GN=msrB PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.491e-19
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  174 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG---AINRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 476
            P  TG+Y+ L+ DG Y C  CGT L+ S TKFDSG GWP+FY+ +      +         R E+ CA C  HLGHVF  +    PT +R+C+NS ++KFIP D
Sbjct:   47 PPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMNSAALKFIPRD 148          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_DROME (Methionine-R-sulfoxide reductase B1 OS=Drosophila melanogaster GN=SelR PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 51/118 (43.22%), Postives = 63/118 (53.39%), Query Frame = -2
Query:  159 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--------------PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS 467
            TG YNK Y  G Y C  C   L+ S TK+DSGCGWPAF + L  G +    D              P+  RTE+ CA C  H+GHVF  E    PT +R+C+NS SI+F+  D   SS
Sbjct:   79 TGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGGNILLLIAHPERIRTEVRCARCNAHMGHVF--EDGPKPTRKRYCINSASIEFVNADPATSS 194          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_VARPS (Peptide methionine sulfoxide reductase msrB OS=Variovorax paradoxus (strain S110) GN=msrB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.207e-18
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAF-YEGLPGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TG+Y   + DG Y+C  CG  L++S TKFD+GCGWP+F  E +PGAI    D      RTE  CA CG HLGHVF      T T  R+C+NS S+ F
Sbjct:   39 TGKYEAHWDDGTYHCICCGAKLFESSTKFDAGCGWPSFSQEAVPGAIRNIVDRSHGMVRTENVCANCGAHLGHVFPDG--PTETGLRYCMNSASLDF 133          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_PSEP1 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=msrB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  174 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 467
            +G+YN    DG Y+C  CG AL+ + TKFD+GCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:   33 SGKYNSERRDGIYHCICCGLALFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PPPTGLRYCINSVCIDLRPRD 131          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB3_MOUSE (Methionine-R-sulfoxide reductase B3, mitochondrial OS=Mus musculus GN=Msrb3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = -2
Query:  171 GEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA 464
            GEY      G Y C  CGT L+KS TKFDSG GWPAF++ +        D       R E +C+ CG HLGH+F  +    PT +R+C+NS S+ F P D+
Sbjct:   66 GEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPAFHDVISSEAIEFTDDFSYGMHRVETSCSQCGAHLGHIF--DDGPRPTGKRYCINSASLSFTPADS 164          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_PSESM (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas syringae pv. tomato GN=msrB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.177e-18
Identity = 45/99 (45.45%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  180 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 467
            +G+YN     G Y+C  C  AL+ S TKFDSGCGWP+FY  L G+     R       RTE+ CA C  HLGHVF       PT  R+C+NSV ++ +P
Sbjct:   33 SGKYNDTKTAGVYHCICCNEALFDSTTKFDSGCGWPSFYAPLEGSAVVEVRDVSHGMIRTEVVCARCDAHLGHVFPDG--PPPTGLRYCINSVCLELVP 129          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_POLNA (Peptide methionine sulfoxide reductase msrB OS=Polaromonas naphthalenivorans (strain CJ2) GN=msrB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.177e-18
Identity = 49/99 (49.49%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  180 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAF-YEGLPGAINRSPDP--DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 467
            TG+Y   YA+G Y C  C   L+ S TKFD+GCGWP+F  E   GAI    D      RTE  CA CG HLGHVF      TPT  R+C+NS S+ F P
Sbjct:   39 TGKYEDNYAEGTYRCICCDAELFDSSTKFDAGCGWPSFSQEVKEGAIEEHVDKAHGMTRTETVCANCGAHLGHVFPDG--PTPTGLRYCMNSASLDFKP 135          
The following BLAST results are available for this feature:
BLAST of CX676018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
YGL4_SCHPO2.721e-2552.04Uncharacterized protein C216.04c OS=Schizosaccharo... [more]
MSRB_LEIXX1.651e-2252.48Peptide methionine sulfoxide reductase msrB OS=Lei... [more]
YCD3_YEAST8.192e-2254.55Uncharacterized protein YCL033C OS=Saccharomyces c... [more]
MSRB_METTH6.491e-1945.19Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_DROME1.446e-1843.22Methionine-R-sulfoxide reductase B1 OS=Drosophila ... [more]
MSRB_VARPS4.207e-1849.48Peptide methionine sulfoxide reductase msrB OS=Var... [more]
MSRB_PSEP15.495e-1845.54Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB3_MOUSE5.495e-1843.56Methionine-R-sulfoxide reductase B3, mitochondrial... [more]
MSRB_PSESM7.177e-1845.45Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_POLNA7.177e-1849.49Peptide methionine sulfoxide reductase msrB OS=Pol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D11-H22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676018 ID=CX676018; Name=CX676018; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTTTTGGTTTATACTATGGCATAGGCTAATATTGGCCGCGTAATA
ATTATACAAACAACACCATGTCTAGGACATTAAAGCCAAAAACAATTGGC
AGAAGTGACAAACAGTCAAATCTTATTCAACAACCCCATGACAGTCTTAC
ATTCTTCATGATGAAGCAGGAGCATCACCTGGAATAAACTTAATTGAAAC
ACTATTGACACAGTGGCGTTCATCTGTAGGCGTTTTGAATCCCTCCCCTT
TGAAGACGTGACCCAAGTGACCCCCGCAAGCAGCACAAGTTATCTCGGTT
CTCCTTCCATCAGGATCAGGGGAGCGATTTATGGCTCCAGGAAGACCTTC
ATAGAAAGCTGGCCACCCACATCCAGAATCGAATTTGGTAACAGACTTGT
AAAGCGCAGTTCCACAGCCAGCACAGTTGTAAAACCCATCCGCATACAAC
TTGTTGTACTCCCCAGTTCCTCGCGGCCTGTGCATTATTTAGCATAAATG
GGCAGATTGACACTGAAAACAAAATTCAAAACTTGCTTTCCGTATGTGTA
TACATAAGTGAAGTTGTATCATCTAGATTTATGAGTTCTAAAGTTTTATT
AAATAAGAAATAGTTTATCCATTAATATTATAAGTTACATGTTCCAAACA
GTTTTGGATATAATGTATTATGTACAAAACTGTAAAACTGGCAACGTATT
AACTATTCTATATACTCTAAAACCCCATATAATCAGTAATTAACTTGAAA
TTGAATTGATGATGAATCCAATGCGTATAACGATTGCATCCATTTTTAAA
GGGGGGGAAAAAATCAAGAAAGCCT
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