CX676015

Overview
NameCX676015
Unique NameCX676015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676015 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1
Query:  499 DKDIALWGVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLEVDLSSAA 708
            DKDI LWGVPLLPSKGAE  DVILLKFLRAR+FKVN+A EMLK TL+WRK NKIDSIL E+   DL++AA
Sbjct:  200 DKDIELWGVPLLPSKGAESTDVILLKFLRARDFKVNEAFEMLKKTLKWRKQNKIDSILGEEFGEDLATAA 269          
BLAST of CX676015 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  502 KDIALWGVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLE 687
            +++++WG+PLL     E  DVILLKFLRAR+FKV +A  MLKNT+QWRK NKID ++ EDLE
Sbjct:  349 EEVSIWGIPLLED---ERSDVILLKFLRARDFKVKEAFTMLKNTVQWRKENKIDDLVSEDLE 407          
BLAST of CX676015 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  502 KDIALWGVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLEVDL 696
            +++ +WG+PLL    +   DV+LLKFLRAREFKV D+  MLKNT++WRK  KID +++EDL  DL
Sbjct:  148 EEVKIWGIPLLEDDRS---DVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLVDDL 209          
BLAST of CX676015 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  502 KDIALWGVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLEV 690
            +++++WGVPLL     E  DVIL KFLRAR+FKV +AL MLKNT+QWRK NKID +++   EV
Sbjct:  240 EEVSIWGVPLLQD---ERSDVILTKFLRARDFKVKEALTMLKNTVQWRKENKIDELVESGEEV 299          
The following BLAST results are available for this feature:
BLAST of CX676015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PATL4_ARATH1.521e-2377.14Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL2_ARATH9.883e-1561.29Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL3_ARATH2.434e-1355.38Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL1_ARATH3.179e-1358.73Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_66D09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D09-H18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676015 ID=CX676015; Name=CX676015; organism=Citrus sinensis; type=EST; length=708bp
AAAAACTCATATTAACTGAAGAAGAGAGTTAATAAGTTTTCTCTCATTGT
TCTTCTTTGAAAACTAAAGGGGTTAACAATGACTGTTGAGGTTGTTAAAG
TTGAAGAAGAAACCCAGAAGGTTGATGGAGTTGCTGCGACGAAAGAAGAG
CCAAAGTCTGTTACGAAATGTTCTTCTTATAAGGAAGAGAGCAATTTTCT
CTCTGATCTGAAGGAGTTTGAGAGGAAGGCTTTGAATGAGTTCAAGGCCA
AGCTTGAAGAAGCCAGTCTTGGGAACAGTTTGTTGAATAAAGAAGAGGAG
ACCATCAAGAAGAATGAAAAGGCAGCAGCCGGTGGAGTTGTAGAGAAGGA
GAAAGAAGCCGAAAAGCCAGTGGATGAAGAAGCTGAACAAGAGGAAGACA
AAAACCCAAAAGAGCAAATAGCCCAAGAAGTTGAAAAGGAAGCTGAGAAA
GAAGAAGAGAAAAATGAAGCTGAAGGAGAAGAGAAATGTGTTGAAGTTGA
TAAGGATATTGCCCTTTGGGGAGTGCCGCTTTTGCCAAGCAAAGGAGCTG
AGGGGATTGATGTGATTCTGCTGAAGTTCTTGAGGGCTAGGGAGTTTAAG
GTGAATGATGCATTGGAGATGCTGAAAAATACGCTTCAGTGGAGGAAGGG
GAACAAGATTGATTCCATTTTGGATGAGGATTTGGAGGTAGATTTAAGCT
CTGCTGCT
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