FC921847

Overview
NameFC921847
Unique NameFC921847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13547 contig Csv1_Contig13547:2..263. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921847 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.979e-23
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   96 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 260
            +ASFKV +LESRDR+GGRIHTDYSFGCPVDMGASWLHGV +ENPLAP+IRRLGLT
Sbjct:   49 EASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVSDENPLAPIIRRLGLT 103
[Close]
BLAST of FC921847 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.641e-21
Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 3 
Query:   96 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGL 257
            DASF+V++LESRDR+GGR+HTDYSFG PVD+GASWLHGVC ENPLAP+I RLGL
Sbjct:   48 DASFQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGL 101
[Close]
BLAST of FC921847 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.384e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 3 
Query:   96 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGL 257
            DASF+VV+LESRDR+GGR+HTDYSFG PVD+GASWLHGVC ENPLA +I RLGL
Sbjct:   49 DASFQVVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAAVIGRLGL 102
The following BLAST results are available for this feature:
BLAST of FC921847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO4_ARATH2.979e-2387.27Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO2_ARATH3.641e-2181.48Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH1.384e-2081.48Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionC06053B01T7 RindPdigS Citrus sinensis cDNA clone C06053B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921847 ID=FC921847; Name=FC921847; organism=Citrus sinensis; type=EST; length=262bp
CGCGGGTCATTGAGAGGGCGCAAATCGGTTCACTGCCTTCTGTCATTGTG
ATTGGTGGTGGTATTTCGGGTCTTGCCGCTGCCCGGATTCTCTATGATGC
TTCTTTTAAGGTGGTCTTACTGGAATCGCGAGACAGACTTGGTGGTCGTA
TTCATACGGACTACTCATTTGGTTGTCCAGTGGACATGGGAGCTTCATGG
CTACATGGTGTATGCAATGAGAATCCCTTGGCCCCACTGATACGTCGTCT
GGGGCTTACATT
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