CX676013

Overview
NameCX676013
Unique NameCX676013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.682e-60
Identity = 113/122 (92.62%), Postives = 121/122 (99.18%), Query Frame = 2
Query:   80 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRGV 445
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRA KIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 7.476e-58
Identity = 108/122 (88.52%), Postives = 119/122 (97.54%), Query Frame = 2
Query:   80 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRGV 445
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRA KIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.029e-40
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX676013 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.045e-39
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 2
Query:   95 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRANKIRG 442
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR  K+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
The following BLAST results are available for this feature:
BLAST of CX676013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH4.682e-6092.6240S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH7.476e-5888.5240S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT3.155e-4071.5540S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB3.155e-4071.5540S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE3.155e-4071.5540S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU3.155e-4071.5540S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN3.155e-4071.5540S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN3.155e-4071.5540S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA7.029e-4070.6940S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_MACFA2.045e-3970.6940S ribosomal protein S24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D08-H16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676013 ID=CX676013; Name=CX676013; organism=Citrus sinensis; type=EST; length=628bp
TTAACTCGCTTCATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGA
GGATTCAGCAGACTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACC
ATTCGAACTAGGAAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATT
CGTTATTGATGTTCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGT
TGAAGGAGAAGTTGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATC
TTTGTTTTTAAGTTCCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTT
TGGTCTGATCTATGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGT
ACAGGCTTATCAGGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAG
CAGATGAAGGAAAGGAAGAACAGGGCTAACAAGATCCGTGGTGTAAAGAA
GACCAAGGCCTCAGATGCTGCCAAGAAGAAGTGAGCAATTGGAGATTCTT
CTGTAGTCTCGAAGCCAATTTTCTGTGATGGAGTTTCTATAATAGTCTTT
TTTTTTTTTTGGTTTAGTTCCTGAAATGAAATCTAGTGTGTTGTGGATTT
TGGTGCCGTTGGATGTTTAGTTATATTT
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