CX676006

Overview
NameCX676006
Unique NameCX676006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.583e-60
Identity = 115/178 (64.61%), Postives = 128/178 (71.91%), Query Frame = 3
Query:   72 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 578
            T+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAFVEF+D RDAEDAI GRDGY+FDG+RLRVELAHG         G                             LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  G TG+VDYT Y+DMKYA++KLD +EFRNAF
Sbjct:    8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAF 185          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.128e-41
Identity = 87/168 (51.79%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R ++VED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 1.061e-40
Identity = 86/168 (51.19%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.174e-39
Identity = 87/178 (48.88%), Postives = 107/178 (60.11%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R ++VED+FYKYG I DIDLK     P +AFVEFED RDAEDA+  RDGY++DGYRLRVE               GG                             +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 191          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.460e-39
Identity = 87/187 (46.52%), Postives = 108/187 (57.75%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH---------------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE                        GG                             +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 201          
The following BLAST results are available for this feature:
BLAST of CX676006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SFRS1_ARATH4.583e-6064.61Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE8.128e-4151.79Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK1.061e-4051.19Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_PONAB3.088e-4050.60Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG3.088e-4050.60Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE3.088e-4050.60Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN3.088e-4050.60Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN3.088e-4050.60Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFR1A_DANRE1.174e-3948.88Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR4.460e-3946.52Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D04-H8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676006 ID=CX676006; Name=CX676006; organism=Citrus sinensis; type=EST; length=840bp
GAGATTTCCACCTCTGAAATTCTAATTTCCGATCAGAAAAAAAAACAAAA
ATGAGCAGCCGATCGAGCCGTACTCTTTACGTCGGAAACCTCCCGGGGGA
TACGAGAATGAGGGAAGTGGAAGACTTGTTCTACAAGTATGGGCCTATTG
TTGATATTGACTTGAAGATCCCACCAAGACCTCCGGGTTACGCCTTTGTT
GAGTTTGAGGACTATCGGGACGCTGAGGATGCAATTCGCGGTCGAGATGG
CTATAACTTTGATGGGTATCGATTGCGAGTTGAACTAGCACATGGGGGTC
GAAGACATTCGTCGTCGGTGGATCGTTATAGCAGTTACAGCAGTGGAGGT
AGCCGTGGAGTCTCCAGGCGCTCTGACTATCGTGTTTTGGTGACTGGATT
ACCTTCATCTGCTTCATGGCAAGACCTCAAGGATCACATGCGTCGTGCTG
GGGATGTCTGTTTTTCTCAAGTGTTTCGCGATCGTGGCGGTATGACGGGA
ATTGTGGATTACACTAGCTATGATGATATGAAATATGCTATAAGGAAACT
TGATCGCTCGGAGTTCCGGAATGCGTTTTCCCGGTCCTATGTGCGGGTGA
GGGAGTATGATTCAAGACGGAGCTATTCTAGAAGTCCAAGTCGTAGTCCT
TATTATTCGAGGAGCCGAAGCCGGAGTCCTTATTATTCGAGGAGCCGAAG
TCCTAGCCGCAGCTGGAGCTATAGTCCCAGGAGCAGGAGCTATTCTCCCA
GGGGAAAATATTCACGTCGGTCTCCATCTCTGTCTCCTGCTAGGTCTGCT
TCTCAGCGTTCACCCTCGGGATCACCTCCTCGGTCTTTTT
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