CX676006
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 4.583e-60 Identity = 115/178 (64.61%), Postives = 128/178 (71.91%), Query Frame = 3 Query: 72 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 578 T+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAFVEF+D RDAEDAI GRDGY+FDG+RLRVELAHG G LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA++KLD +EFRNAF Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAF 185
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 8.128e-41 Identity = 87/168 (51.79%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R ++VED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 167.162 bits (422), Expect = 1.061e-40 Identity = 86/168 (51.19%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40 Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40 Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40 Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40 Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40 Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 1.174e-39 Identity = 87/178 (48.88%), Postives = 107/178 (60.11%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R ++VED+FYKYG I DIDLK P +AFVEFED RDAEDA+ RDGY++DGYRLRVE GG +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 191
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.460e-39 Identity = 87/187 (46.52%), Postives = 108/187 (57.75%), Query Frame = 3 Query: 75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH---------------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 572 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE GG +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 201 The following BLAST results are available for this feature:
BLAST of CX676006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676006 ID=CX676006; Name=CX676006; organism=Citrus sinensis; type=EST; length=840bpback to top |