CX676005

Overview
NameCX676005
Unique NameCX676005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.139e-25
Identity = 61/113 (53.98%), Postives = 69/113 (61.06%), Query Frame = -2
Query:  595 YRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---------LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 906
            +RLRVELAHGG                                      LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  G TG+VDYT Y+DMKYA++KLD +EFRNAF
Sbjct:   73 HRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAF 185          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  124 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  123 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  133 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 191          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  143 VVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 201          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V GLP + SWQDLKDHMR AGDVC++ V RD    TG+V++T Y+D+KYA+RKLD ++FR+
Sbjct:  126 IVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRS 184          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786
            +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR+
Sbjct:  124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182          
The following BLAST results are available for this feature:
BLAST of CX676005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SFRS1_ARATH4.139e-2553.98Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFRS1_CHICK2.277e-1559.68Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFR1B_DANRE2.277e-1559.68Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFR1A_DANRE2.277e-1559.68Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR2.973e-1559.68Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
RSP3_CAEEL2.973e-1559.68Probable splicing factor, arginine/serine-rich 3 O... [more]
SFRS1_PONAB6.624e-1558.06Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG6.624e-1558.06Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE6.624e-1558.06Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN6.624e-1558.06Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D04-H8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676005 ID=CX676005; Name=CX676005; organism=Citrus sinensis; type=EST; length=907bp
ATTGGGGTACCGCGGCCCCCCCCTCCATAATAATAAATTACTACACAAGT
ATACAACAATACATGACGATTTGCAGTACTCGAAATCCAAATCATAATGA
GCTCTCTCTAGTTGTTATTCCAAGTTTCTACCATTAAACCTCTACAAAGC
TACATAAAATAACATTATGTTTGAATCCCAAATAGTCAAATCCTTGAGGC
ATACCAGTTGGCATTAACCTGATCTCACCTAAGGTGAAAGGGATCGAGAT
ATGCTCCGGGTCCTGCTTCGACTGCGTCCCCTTGGGCTACGAGGAGATGA
CAATGGAGAACTGGACCTAGACCGGGATCTTGAAAAAGACCGAGGAGGTG
ATCCCGAGGGTGAACGCTGAGAAGCAGACCTAGCAGGAGACAGAGATGGA
GACCGACGTGAATATTTTCCCCTGGGAGAATAGCTCCTGCTCCTGGGACT
ATAGCTCCAGCTGCGGCTAGGACTTCGGCTCCTCGAATAATAAGGACTCC
GGCTTCGGCTCCTCGAATAATAAGGACTACGACTTGGACTTCTAGAATAG
CTCCGTCTTGAATCATACTCCCTCACCCGCACATAGGACCGGGAAAACGC
ATTCCGGAACTCCGAGCGATCAAGTTTCCTTATAGCATATTTCATATCAT
CATAGCTAGTGTAATCCACAATTCCCGTCATACCGCCACGATCGCGAAAC
ACTTGAGAAAAACAGACATCCCCAGCACGACGCATGTGATCCTTGAGGTC
TTGCCATGAAGCAGATGAAGGTAATCCAGTCACCAAAACACGATAGTCAG
AGCGCCTGGAGACTCCACGGCTACCTCCACTGCTGTAACTGCTATAACGA
TCCACCGACGACGAATGTCTTCGACCCCCATGTGCTAGTTCAACTCGCAA
TCGATAC
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