CX676005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.139e-25 Identity = 61/113 (53.98%), Postives = 69/113 (61.06%), Query Frame = -2 Query: 595 YRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---------LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 906 +RLRVELAHGG LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA++KLD +EFRNAF Sbjct: 73 HRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAF 185
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15 Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 124 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15 Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 123 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15 Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 133 IVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 191
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15 Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 143 VVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 201
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15 Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V GLP + SWQDLKDHMR AGDVC++ V RD TG+V++T Y+D+KYA+RKLD ++FR+ Sbjct: 126 IVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRS 184
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15 Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15 Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15 Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of CX676005 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15 Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 601 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 786 +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR+ Sbjct: 124 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 182 The following BLAST results are available for this feature:
BLAST of CX676005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676005 ID=CX676005; Name=CX676005; organism=Citrus sinensis; type=EST; length=907bpback to top |