FC921846

Overview
NameFC921846
Unique NameFC921846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7742 contig Csv1_Contig7742:235..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.377e-19
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW SPVAW L G++T QVGD +S+V I    +  M++K  +++ + F  DF+PVV+++HI W+ +FLF FAY IK +NFQRR
Sbjct: 1374 YWASPVAWTLYGIITSQVGDRDSIVHITGVGD--MSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.760e-19
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW +PVAW L GL+T QVGD +S+V I    +  + +K  +++ + F+ DF+PVV+++HI W+ +FLFVFAY IK +NFQRR
Sbjct: 1375 YWATPVAWTLYGLITSQVGDKDSMVHISGIGD--IDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.958e-15
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW +PV+W + G++  Q  D + +V +P G +T M VK F+E N  FK DF+  V + H  ++ +F F+F Y IK +NFQ+R
Sbjct: 1374 YWANPVSWTIYGVIASQFADSDRVVTVP-GQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.046e-15
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW+ PVAW + GL+  Q GD+E+ +++  G    +TVKQ+IED+Y F+ DF+  V+ + I +   F F+FA+ I+ +NFQ R
Sbjct: 1389 YWICPVAWTVYGLIVSQYGDVETRIQVL-GGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.608e-15
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW +PVAW L GL+  Q GD E  V++ DG +  M VKQ +ED   +K DF+ V +IM + +   F  VFA+AIKA NFQRR
Sbjct: 1340 YWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVM-VKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.579e-14
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW SPVAW + G+   QVGD    +E+  G   K+ V +F+++   +  DF+ VV   H+ W+ +F FVFAY IK +N+Q+R
Sbjct: 1381 YWASPVAWTIYGIFASQVGDRTDELELT-GETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.517e-14
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW  P+AW L GLV  Q GDL+    + D N T   V+QF+  N+ FK DF+ VV+ + + +  VF F FA  IKA NFQRR
Sbjct: 1360 YWGCPIAWTLYGLVASQFGDLQD--PLTDQNQT---VEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.243e-13
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW+ PVAW + GL+T Q GD+E+ + +  G    +TVKQ+I+D Y F+ D++  V+ + + +   F F+FA+ IK +NFQ R
Sbjct: 1362 YWICPVAWTIYGLITSQYGDVETPIALL-GGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.616e-13
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    5 WLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            W+ PVAW L GLV  Q GD++ ++E         TV QF+ D + F  +F+ VV+++H+V+   F F+F++AI   NFQRR
Sbjct: 1375 WICPVAWTLYGLVASQFGDIQHVLE-----GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.723e-13
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW +PVAW L GLV  Q GD+++ +      +   TV+QF+   + FK DF+ VV+ +   ++ +F F FA+AIKA NFQRR
Sbjct: 1359 YWANPVAWTLYGLVASQFGDIQTKL------SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
The following BLAST results are available for this feature:
BLAST of FC921846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
AB34G_ARATH3.377e-1950.00ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH5.760e-1950.00ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR5_ORYSJ2.958e-1541.46Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB36G_ARATH5.046e-1542.68ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB32G_ARATH8.608e-1550.00ABC transporter G family member 32 OS=Arabidopsis ... [more]
PDR2_NICPL5.579e-1441.46Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_NICPL9.517e-1447.56Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB35G_ARATH1.243e-1341.46ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR4_ORYSJ3.616e-1341.98Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_TOBAC4.723e-1343.90Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionC06053A11T7 RindPdigS Citrus sinensis cDNA clone C06053A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921846 ID=FC921846; Name=FC921846; organism=Citrus sinensis; type=EST; length=328bp
CTACTGGCTTTCTCCGGTGGCTTGGAATCTGTGTGGCCTTGTTACTTGTC
AAGTTGGTGACTTAGAGTCACTTGTGGAGATTCCTGATGGTAATAATACT
AAAATGACAGTGAAGCAATTCATCGAAGATAATTATGATTTCAAGAAAGA
TTTCATTCCTGTCGTTAGTATCATGCACATTGTCTGGATGGCCGTGTTCT
TGTTTGTGTTTGCCTATGCCATCAAGGCCATCAACTTCCAAAGGAGATAA
ACCAGCTCAAATCTTAAGAATGATAGACCTAAGTGAGCATGTGGGAAACA
AAAGGTTACCACATTTTTTTTTTCTTTT
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