CX676002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.352e-25 Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRT---EGTXXXXXXXXXXXXXXIRLVSNGKPE 456 MEFWG EVKSG+PL + PGD ++HLSQASLGE+KKDK SES GTL+++K PQ FDL ++DFELSHN K+GSVYF GYK E + L ++GKPE Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDEDIPLTLANSGKPE 126
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21 Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369 MEFWGVEVK+G+PL ++PG +++VH+SQ +LGE K+ +E GTLS +KFPQ S ++ +E++F LSH WKNGSV+F+GYK+ Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV 94
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 9.447e-20 Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 366 MEFWG+EVKSG+P+ + P + ++H+SQASLGE K KG E GTLS + PQ DL +K+FELSH W GSVYF GYK Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18 Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGD--NKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRTEGTXXXXXXXXXXXXXXIRL--VSNGKPELQAK 468 MEFWGVEVK GQ + ++P D + +H+SQ +LGE KKDK +E GTLS P S DL ++ D ELSH K+ SV+F GYK+ T + L NGKPEL+A+ Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAE 132
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18 Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369 MEFWG+EVK G +K PG I+H+SQA+LGE KK S+S GTLS K+PQ FDL K+FELSH K SV+F+GYK+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKV 92
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17 Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369 MEFWG+EVK G +K PG ++HLSQA+LGE KK S++ GTLS K P FDL +K+FELSH K SV+FTGYK+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17 Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369 MEFWG+EVK G +K PG ++HLSQA+LGE KK S++ GTLS K P FDL +K+FELSH K SV+FTGYK+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14 Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 366 MEFWGV V K+ P ++ +VH+SQASL K ES GTLS KFPQ SFDL +K+FELSH+ +V+F GYK Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKS--GESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSE--SXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 366 MEFWG+E+K G+P K+ D +VH SQ +LG+++K K E + G LS QKFPQFS DL + +FE+SHN SVY GY+ Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYR 94 The following BLAST results are available for this feature:
BLAST of CX676002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676002 ID=CX676002; Name=CX676002; organism=Citrus sinensis; type=EST; length=797bpback to top |