CX676002

Overview
NameCX676002
Unique NameCX676002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.352e-25
Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRT---EGTXXXXXXXXXXXXXXIRLVSNGKPE 456
            MEFWG EVKSG+PL + PGD  ++HLSQASLGE+KKDK SES              GTL+++K PQ  FDL  ++DFELSHN K+GSVYF GYK      E                + L ++GKPE
Sbjct:    1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDEDIPLTLANSGKPE 126          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369
            MEFWGVEVK+G+PL ++PG +++VH+SQ +LGE  K+  +E               GTLS +KFPQ S ++ +E++F LSH WKNGSV+F+GYK+
Sbjct:    1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV 94          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.447e-20
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 366
            MEFWG+EVKSG+P+ + P +  ++H+SQASLGE K  KG E               GTLS +  PQ   DL  +K+FELSH W  GSVYF GYK
Sbjct:    1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGD--NKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRTEGTXXXXXXXXXXXXXXIRL--VSNGKPELQAK 468
            MEFWGVEVK GQ + ++P D  +  +H+SQ +LGE KKDK +E               GTLS    P  S DL ++ D ELSH  K+ SV+F GYK+ T                 + L    NGKPEL+A+
Sbjct:    1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAE 132          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369
            MEFWG+EVK G  +K  PG   I+H+SQA+LGE KK   S+S              GTLS  K+PQ  FDL   K+FELSH  K  SV+F+GYK+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKV 92          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369
            MEFWG+EVK G  +K  PG   ++HLSQA+LGE KK   S++              GTLS  K P   FDL  +K+FELSH  K  SV+FTGYK+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 369
            MEFWG+EVK G  +K  PG   ++HLSQA+LGE KK   S++              GTLS  K P   FDL  +K+FELSH  K  SV+FTGYK+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 366
            MEFWGV V      K+ P ++ +VH+SQASL    K    ES              GTLS  KFPQ SFDL  +K+FELSH+    +V+F GYK
Sbjct:    1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKS--GESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92          
BLAST of CX676002 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   85 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSE--SXXXXXXXXXXXXXXGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 366
            MEFWG+E+K G+P K+   D  +VH SQ +LG+++K K  E  +              G LS QKFPQFS DL +  +FE+SHN    SVY  GY+
Sbjct:    1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYR 94          
The following BLAST results are available for this feature:
BLAST of CX676002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDT1_SOLCH3.352e-2548.82Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT3_ARATH6.543e-2149.47Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_ARATH9.447e-2050.00Histone deacetylase HDT1 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN5.184e-1840.15Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT2_MAIZE8.843e-1849.47Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT3_MAIZE7.486e-1748.42Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT1_MAIZE7.486e-1748.42Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT2_ARATH5.931e-1444.68Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
HDT4_ARATH2.254e-1343.75Histone deacetylase HDT4 OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_66D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D01-H2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676002 ID=CX676002; Name=CX676002; organism=Citrus sinensis; type=EST; length=797bp
TCTTAAAAATAATTATATATTCTAGTAGCTCTTGTAGAAAATAATAGAAC
AAGGCACTCGCCACTCTCTGTCATGTCAACACTCATGGAGTTCTGGGGTG
TTGAGGTGAAAAGTGGACAACCGCTAAAGATTAATCCGGGTGATAACAAA
ATTGTGCATCTCTCACAGGCTTCTCTTGGTGAGATCAAGAAGGATAAAGG
AAGTGAATCTGTATATCTCTATCTGAAGGTTGATGATAAGAAGCTTGTTC
TCGGAACTCTTTCTGCTCAGAAGTTCCCTCAGTTTAGTTTTGATCTGGCT
ATTGAAAAAGATTTTGAACTGTCTCATAATTGGAAAAATGGGAGTGTCTA
CTTCACTGGATATAAACTTCGAACAGAGGGTACTGATGATGATGATAATT
CTGACTCTGATGAAGACAAAATGGATATTCGGCTTGTTAGTAATGGGAAA
CCCGAGTTACAGGCCAAACCTCTTTCTGAAAAGCACTGCAGGAACTTTTT
ACTGGTGATGGACAATCCAAAAAAGGACGAAGGGGCCAAAATGAGATTCC
CCTCCCTCCAAGTGTCTACCAAAGGCTCACTTCAAGTTCCACGCTATTGA
ATCTGGCTCAGGCTTTAGCTTATCATAGAATGTGTTATGATGAGATGCCA
CTTCAAGAGCTGCAAGTAACACAAGAGGAACAGACCATTCAAAATCTATG
TGATACCCTTCGAACTATACTCCGCCTGTAGATAATTTTATGTGGAAATG
AAAAATAGAAAAGTATTAAATCTTTTGAATTTTTGTTTCTCCCTTCA
back to top