CX676001

Overview
NameCX676001
Unique NameCX676001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.783e-25
Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = -3
Query:  442 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRT---EGTXXXXXXXXXXXXXDIRLVSNGKPE 813
            MEFWG EVKSG+PL + PGD  ++HLSQASLGE+KKDK SES             LGTL+++K PQ  FDL  ++DFELSHN K+GSVYF GYK      E                + L ++GKPE
Sbjct:    1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDEDIPLTLANSGKPE 126          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = -3
Query:  529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813
            MEFWGVEVK+G+PL ++PG +++VH+SQ +LGE  K+  +E              +GTLS +KFPQ S ++ +E++F LSH WKNGSV+F+GYK+
Sbjct:    1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV 94          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.066e-19
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  532 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 813
            MEFWG+EVKSG+P+ + P +  ++H+SQASLGE K  KG E              LGTLS +  PQ   DL  +K+FELSH W  GSVYF GYK
Sbjct:    1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = -3
Query:  430 MEFWGVEVKSGQPLKINPGD--NKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRTEGTXXXXXXXXXXXXXDIRL--VSNGKPELQAK 813
            MEFWGVEVK GQ + ++P D  +  +H+SQ +LGE KKDK +E              LGTLS    P  S DL ++ D ELSH  K+ SV+F GYK+ T                ++ L    NGKPEL+A+
Sbjct:    1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAE 132          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.979e-18
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = -3
Query:  529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813
            MEFWG+EVK G  +K  PG   I+H+SQA+LGE KK   S+S             +GTLS  K+PQ  FDL   K+FELSH  K  SV+F+GYK+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKV 92          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813
            MEFWG+EVK G  +K  PG   ++HLSQA+LGE KK   S++             +GTLS  K P   FDL  +K+FELSH  K  SV+FTGYK+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813
            MEFWG+EVK G  +K  PG   ++HLSQA+LGE KK   S++             +GTLS  K P   FDL  +K+FELSH  K  SV+FTGYK+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = -3
Query:  532 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 813
            MEFWGV V      K+ P ++ +VH+SQASL    K    ES             +GTLS  KFPQ SFDL  +K+FELSH+    +V+F GYK
Sbjct:    1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKS--GESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92          
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = -3
Query:  532 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSE--SXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 813
            MEFWG+E+K G+P K+   D  +VH SQ +LG+++K K  E  +             +G LS QKFPQFS DL +  +FE+SHN    SVY  GY+
Sbjct:    1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYR 94          
The following BLAST results are available for this feature:
BLAST of CX676001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDT1_SOLCH3.783e-2549.61Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT3_ARATH7.384e-2149.47Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_ARATH1.066e-1951.06Histone deacetylase HDT1 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN5.850e-1840.91Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT2_MAIZE9.979e-1849.47Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT3_MAIZE8.448e-1748.42Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT1_MAIZE8.448e-1748.42Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT2_ARATH6.694e-1444.68Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
HDT4_ARATH2.544e-1343.75Histone deacetylase HDT4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_66D01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D01-H2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676001 ID=CX676001; Name=CX676001; organism=Citrus sinensis; type=EST; length=860bp
AGATTGGACATTTAACTGCCCCTTTGCAACTATCTTTGGCCATCCTCAAA
CCTACACAAAATGTACTGCTACGGAGAACAGGAAAACAATAATTGAACTA
TGAAGGGAGAAACAAAAATTCAAAAGATTTAATACTTTTCTATTTTTCAT
TTCCACATAAAATTATCTACAGGCGGAGTATAGTTCGAAGGGTATCACAT
AGATTTTGAATGGTCTGTTCCTCTTGTGTTACTTGCAGCTCTTGAAGTGG
CATCTCATCATAACACATTCTATGATAAGCTAAAGCCTGAGCCAGATTCA
ATAGCGTGGAACTTGAAGTGAGCCTTTGGTAGACACTTGGAGGGAGGGGA
ATCTCATTTTGGCCCCTTCGTCCTTTTTTGGATTGTCCATCACCAGTAAA
AAGTTCCTGCAGTGCTTTTCAGAAAGAGGTTTGGCCTGTAACTCGGGTTT
CCCATTACTAACAAGCCGAATATCCATTTTGTCTTCATCAGAGTCAGAAT
TATCATCATCATCAGTACCCTCTGTTCGAAGTTTATATCCAGTGAAGTAG
ACACTCCCATTTTTCCAATTATGAGACAGTTCAAAATCTTTTTCAATAGC
CAGATCAAAACTAAACTGAGGGAACTTCTGAGCAGAAAGAGTTCCGAGAA
CAAGCTTCTTATCATCAACCTTCAGATAGAGATATACAGATTCACTTCCT
TTATCCTTCTTGATCTCACCAAGAGAAGCCTGTGAGAGATGCACAATTTT
GTTATCACCCGGATTAATCTTTAGCGGTTGTCCACTTTTCACCTCAACAC
CCCAGAACTCCATGAGTGTTGACATGACAGAGAGTGGCGAGTGCCTTGTT
CTATTATTTT
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