CX676001
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.783e-25 Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = -3 Query: 442 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRT---EGTXXXXXXXXXXXXXDIRLVSNGKPE 813 MEFWG EVKSG+PL + PGD ++HLSQASLGE+KKDK SES LGTL+++K PQ FDL ++DFELSHN K+GSVYF GYK E + L ++GKPE Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDEDIPLTLANSGKPE 126
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21 Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = -3 Query: 529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813 MEFWGVEVK+G+PL ++PG +++VH+SQ +LGE K+ +E +GTLS +KFPQ S ++ +E++F LSH WKNGSV+F+GYK+ Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV 94
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.066e-19 Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = -3 Query: 532 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 813 MEFWG+EVKSG+P+ + P + ++H+SQASLGE K KG E LGTLS + PQ DL +K+FELSH W GSVYF GYK Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18 Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = -3 Query: 430 MEFWGVEVKSGQPLKINPGD--NKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKLRTEGTXXXXXXXXXXXXXDIRL--VSNGKPELQAK 813 MEFWGVEVK GQ + ++P D + +H+SQ +LGE KKDK +E LGTLS P S DL ++ D ELSH K+ SV+F GYK+ T ++ L NGKPEL+A+ Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAE 132
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.979e-18 Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = -3 Query: 529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813 MEFWG+EVK G +K PG I+H+SQA+LGE KK S+S +GTLS K+PQ FDL K+FELSH K SV+F+GYK+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKV 92
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17 Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = -3 Query: 529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813 MEFWG+EVK G +K PG ++HLSQA+LGE KK S++ +GTLS K P FDL +K+FELSH K SV+FTGYK+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17 Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = -3 Query: 529 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYKL 813 MEFWG+EVK G +K PG ++HLSQA+LGE KK S++ +GTLS K P FDL +K+FELSH K SV+FTGYK+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV 92
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14 Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = -3 Query: 532 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 813 MEFWGV V K+ P ++ +VH+SQASL K ES +GTLS KFPQ SFDL +K+FELSH+ +V+F GYK Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKS--GESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92
BLAST of CX676001 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13 Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = -3 Query: 532 MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSE--SXXXXXXXXXXXXXLGTLSAQKFPQFSFDLAIEKDFELSHNWKNGSVYFTGYK 813 MEFWG+E+K G+P K+ D +VH SQ +LG+++K K E + +G LS QKFPQFS DL + +FE+SHN SVY GY+ Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYR 94 The following BLAST results are available for this feature:
BLAST of CX676001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676001 ID=CX676001; Name=CX676001; organism=Citrus sinensis; type=EST; length=860bpback to top |