CX675998

Overview
NameCX675998
Unique NameCX675998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21
Identity = 55/81 (67.90%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF IDHPGAVP+  AQG EL KLIGAPA IE SSKTQQNVKAVFDAAI+VVL               CSIL
Sbjct:  117 GTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKACSIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 54/81 (66.67%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF IDHPGAVP+  AQG EL KLIGAPA IE SSKTQ+NVK VFDAAIRVVL               CSIL
Sbjct:  117 GTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.718e-20
Identity = 53/81 (65.43%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF +DHPGAVP+  AQG EL KLI APA IE SSK+QQNVKAVFDAAIRVVL               CSIL
Sbjct:  117 GTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.930e-20
Identity = 53/81 (65.43%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDK F  DHPGAVP+  AQG EL KLIGAPA IE SSKTQQNVKAVFDAAI+VVL               CSIL
Sbjct:  117 GTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSCSIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.930e-20
Identity = 53/81 (65.43%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF IDHPGAVP+  AQG EL K IGAP  IE SSKTQ+NVKAVFDAAIRVVL               CSIL
Sbjct:  117 GTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF +DHPGAVP+  AQG EL KLIGA A IE SSKTQQN+KAVFDAAI+VVL               C+IL
Sbjct:  117 GTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQPPKQKKKKKKAQKGCAIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.998e-20
Identity = 52/81 (64.20%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF IDHPGAVP+   QG EL KLIGAPA IE SSK+Q+NVK VFDAAIRVVL               CSIL
Sbjct:  117 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQPPKQKKKKNKAQKACSIL 197          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = -3
Query:  273 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVL 458
            GTKL+ RDDKQF  +HPGAVP+  AQG EL KLIGAPA IE S+KTQQNVKAVFDAAI+VVL
Sbjct:  117 GTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVL 178          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.526e-19
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = -3
Query:  273 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVL 458
            GTKL+ RDDKQF IDHPGAVP+   QG EL KLIG+P  IE SSKTQQNVKAVFDAAI+VVL
Sbjct:  117 GTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178          
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.231e-18
Identity = 50/81 (61.73%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTKL+ RDDKQF +DHPGAVP+  AQG EL K IGAP  IE SSKTQ NVK VFDAAI+VVL               CSIL
Sbjct:  117 GTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL 197          
The following BLAST results are available for this feature:
BLAST of CX675998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAC1_BETVU2.029e-2167.90Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC1_ARATH5.904e-2166.67Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RHO1_PEA1.718e-2065.43Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_LOTJA2.930e-2065.43Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC11_ARATH2.930e-2065.43Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC5_ORYSJ3.827e-2062.96Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC6_ARATH4.998e-2064.20Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC3_ARATH1.899e-1977.42Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC5_ARATH5.526e-1977.42Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC6_ORYSJ1.231e-1861.73Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C08-F16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675998 ID=CX675998; Name=CX675998; organism=Citrus sinensis; type=EST; length=460bp
TTTTTTTTTTTTTTTTTGGGCAACAATGTAATGCATTTCAACAATTAAAG
CCCATCACAACAATTCCCACAAAACAATACAAAACCACCTGAAGATTCAA
AGAGAGATCCTCACAGTTTGGCAATTGAGATTTCTTCCAGAGCAAAGGAA
GAAAGATGAGGGAAAATTTGAGAAAGGACAGAGGGTCATAATCTCTTTAC
ACCTAATTTCAATCACAATATGGAGCAGGGCTTTTGTGCTTTATTCTTTT
TCTTCTTCGGCTTTGGGGGGTGGAGGACAACTCTGATGGCTGCATCAAAT
ACCGCCTTCACATTCTGCTGGGTTTTTGAACTGGGTTCAATGGAAGCAGG
GGCACCAATCAACTTCCCCAGCTCCCCCCCCTGAGCTGGACCAAGGGGCA
CGGCACCTGGATGATCAATGGAAAACTGCTTATCATCCCGAAAATTAAGC
TTTGTTCCAA
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