CX675995

Overview
NameCX675995
Unique NameCX675995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675995 vs. ExPASy Swiss-Prot
Match: PP208_ARATH (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.219e-33
Identity = 69/125 (55.20%), Postives = 96/125 (76.80%), Query Frame = -2
Query:  461 VREYDLKPWHTTYEELIKNLLVQR-----GFXDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 820
            V++  LKPWH+TY+ +++NLL+++     GF +ALSLL +M++HGFPPFVDPF+ Y+S SGTS +A AFLK +TSK+FPS S+VL +F A  ++ RHSEAQDLLS  P Y+R +A+VL L  + K
Sbjct:  523 VKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEVLELFNTMK 647          
BLAST of CX675995 vs. ExPASy Swiss-Prot
Match: PP387_ARATH (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.920e-32
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  461 VREYDLKPWHTTYEELIKNLLVQR-----GFXDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 820
            V +  LKP H+TY+ L+ NLL ++     GF +ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTS  FP +SVVL +F    ++ RHSEAQDLLS CP Y+RN+ DVL L  + K
Sbjct:  530 VTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMK 654          
BLAST of CX675995 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  476 VREYDLKPWHTTYEELIKNLLVQRGFXDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 820
            V+  ++KPW +TY+ LI  LL  +   +AL LL +MK   +P + + F  Y++K GT +DA  FL  ++SK  PS +    +  AF++  R ++A++LL  CP + + H  +  L
Sbjct:  502 VKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFKTHPKISEL 616          
The following BLAST results are available for this feature:
BLAST of CX675995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP208_ARATH1.219e-3355.20Pentatricopeptide repeat-containing protein At3g02... [more]
PP387_ARATH3.920e-3254.40Pentatricopeptide repeat-containing protein At5g15... [more]
PP269_ARATH3.686e-1434.78Pentatricopeptide repeat-containing protein At3g48... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_66C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C05-F10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675995 ID=CX675995; Name=CX675995; organism=Citrus sinensis; type=EST; length=824bp
TGTTAACCTTGCTAGAGCACTCTAATAACTATTTCAAAGATGGTTCCTAC
TAATTGGAACTTCAGGAAATCTGATGGTTACAATGATAAATTCAAAATAT
ATGATTACAGATGAACTTAAACTGTTAGTTCTGATAAACTATTGAACAAA
ATCTGCATTTATTGGATTCTACATTCAGTTTAGTCGTTCACAAATCATTT
AAGGACTTCAGTGCTATATGCACGTAAGAAATTGTAAGGGGAAAAAGATG
TATCTAATAAAAGAGAATGATGTAAAAATTGAATACCTTATAGGTTTTAT
TTGCCACTCAGCGAAAATTATCATGTGCAAGCAGGTTATGAGTTTAGAAT
TAGAAGCATCAAAATTTTCATACCCAAAAACATCAACCGCACAAAATAGG
GAATAAAATACACTACAATGAAACCTAAGCAGTCACAGCAGGTGCAGAAT
CTCCGCCAGATTTCTTGGAATAGAGCAGATTTAAAACATCGGCATGATTG
CGGACGTAACGTGGGCATTTGGACAGGAGATCTTGTGCTTCGCTATGCCT
TCTTGCCTGGAAAAAGGCTGCAAATAAACAAAGAACCACAGACATGGATG
GAAACCTCTTCGAAGTCATACCCTTAAGGAAAGCGATAGCATCATCACTG
GTTCCAGACTTTGATACATACTTGATGAATGGATCCACAAAAGGTGGGAA
GCCATGATCCTTCATCAAACACAGAAGACTTAATGCATCTNTAAACCCAC
GCTGAACTAATAAATTCTTTATCAATTCTTCATATGTAGTATGCCAAGGT
TTCAAATCATATTCACGCACACAG
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