CX675994

Overview
NameCX675994
Unique NameCX675994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675994 vs. ExPASy Swiss-Prot
Match: PP208_ARATH (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.301e-34
Identity = 70/131 (53.44%), Postives = 98/131 (74.81%), Query Frame = 3
Query:    3 KFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 380
            K     V++  LKPWH+TY+ +++NLL+++     GF++ALSLL +M++HGFPPFVDPF+ Y+S SGTS +A AFLK +TSK+FPS S+VL +F A  ++ RHSEAQDLLS  P Y+R +A+VL L  + K
Sbjct:  517 KLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEVLELFNTMK 647          
BLAST of CX675994 vs. ExPASy Swiss-Prot
Match: PP387_ARATH (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.360e-32
Identity = 68/125 (54.40%), Postives = 89/125 (71.20%), Query Frame = 3
Query:   21 VREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 380
            V +  LKP H+TY+ L+ NLL ++     GF++ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTS  FP +SVVL +F    ++ RHSEAQDLLS CP Y+RN+ DVL L  + K
Sbjct:  530 VTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMK 654          
BLAST of CX675994 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.628e-15
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = 3
Query:    6 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 365
            F+   V+  ++KPW +TY+ LI  LL  +  ++AL LL +MK   +P + + F  Y++K GT +DA  FL  ++SK  PS +    +  AF++  R ++A++LL  CP + + H  +  L
Sbjct:  497 FLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFKTHPKISEL 616          
The following BLAST results are available for this feature:
BLAST of CX675994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP208_ARATH4.301e-3453.44Pentatricopeptide repeat-containing protein At3g02... [more]
PP387_ARATH2.360e-3254.40Pentatricopeptide repeat-containing protein At5g15... [more]
PP269_ARATH7.628e-1534.17Pentatricopeptide repeat-containing protein At3g48... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_66C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C05-F10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675994 ID=CX675994; Name=CX675994; organism=Citrus sinensis; type=EST; length=843bp
GCAAGTTTGTCCATAACTGTGTGCGTGAATATGATTTGAAACCTTGGCAT
ACTACATATGAAGAATTGATAAAGAATTTATTAGTTCAGCGTGGGTTTAA
AGATGCATTAAGTCTTCTGTGTTTGATGAAGGATCATGGCTTCCCACCTT
TTGTGGATCCATTCATCAAGTATGTATCAAAGTCTGGAACCAGTGATGAT
GCTATCGCTTTCCTTAAGGGTATGACTTCGAAGAGGTTTCCATCCATGTC
TGTGGTTCTTTGTTTATTTGCAGCCTTTTTCCAGGCAAGAAGGCATAGCG
AAGCACAAGATCTCCTGTCCAAATGCCCACGTTACGTCCGCAATCATGCC
GATGTTTTAAATCTGCTCTATTCCAAGAAATCTGGCGGAGATTCTGCACC
TGCTGTGACTGCTTAGGTTTCATTGTAGTGTATTTTATTCCCTATTTTGT
GCGGTTGATGTTTTTGGGTATGAAAATTTTGATGCTTCTAATTCTAAACT
CATAACCTGCTTGCACATGATAATTTTCGCTGAGTGGCAAATAAAACCTA
TAAGGTATTCAATTTTTACATCATTCTCTTTTATTAGATACATCTTTTTC
CCCTTACAATTTCTTACGTGCATATAGCACTGAAGTCCTTAAATGATTTG
TGAACGACTAAACTGAATGTAGAATCCAATAAATGCAGATTTTGTTCAAT
AGTTTATCAGAACTAACAGTTTAAGTTCATCTGTAATCATATATTTTGAA
TTTATCATTGTAACCATCAGATTTCCTGAAGTTCCAATTAGTAGGAACCA
TCTTTGAAATAGTTATTAGAGTGCTCTAGCAAGGTTAACACCT
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