CX675993

Overview
NameCX675993
Unique NameCX675993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.710e-44
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIVN 295
            LDYT+TKGAIVAFTRGLALQ  E+GIRVNGVAPGPIWTPLIPASF EE+   FG++VPMKRAGQPIEVAP +VFLACNHCSSY TGQVLHPNGG +VN
Sbjct:  190 LDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNEEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVN 287          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-41
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIVN 295
            L+YT+TKGAIV+FTRGLALQ   +GIRVNGVAPGP+WTPLIPASF+EE   QFG++ PMKRA QP+EVAP +VFLACNHCSSY TGQ+LHPNGG IVN
Sbjct:  191 LEYTATKGAIVSFTRGLALQLAPKGIRVNGVAPGPVWTPLIPASFSEEAIKQFGSETPMKRAAQPVEVAPSYVFLACNHCSSYYTGQILHPNGGLIVN 288          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.503e-37
Identity = 75/100 (75.00%), Postives = 87/100 (87.00%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLA-CNHCSSYITGQVLHPNGGTIVNG 298
            LDYT+TKGAIVAFTRGL+LQ + +GIRVNGVAPGP+WTPLIP+SF EEE  QFG++VPMKRAGQP E+A  +VFLA C+  SSY +GQVLHPNGG IVNG
Sbjct:  194 LDYTATKGAIVAFTRGLSLQLISKGIRVNGVAPGPVWTPLIPSSFDEEEVKQFGSEVPMKRAGQPYEIATAYVFLASCD--SSYYSGQVLHPNGGAIVNG 291          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.622e-36
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIVNG 298
            LDYT+TKGAIVAFTR LALQ  E GIRVNGVAPGPIWTPLIPASF EE+  QFG+QVPM RAGQP EVAP FVFLA +  +SY++GQ+LH NGG IVNG
Sbjct:  203 LDYTATKGAIVAFTRALALQLAEEGIRVNGVAPGPIWTPLIPASFAEEKVRQFGSQVPMGRAGQPSEVAPSFVFLASDD-ASYMSGQMLHVNGGVIVNG 300          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: YHXC_BACSU (Uncharacterized oxidoreductase yhxC OS=Bacillus subtilis GN=yhxC PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 62/99 (62.63%), Postives = 80/99 (80.81%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIVNG 298
            +DY++TKGAIV FTR L+   V++GIRVN VAPGPIWTPLIPASF  ++   FG+ VPM+R GQP+EVAP +++LA +  S+Y+TGQ +H NGGTIVNG
Sbjct:  188 IDYSATKGAIVTFTRSLSQSLVQQGIRVNAVAPGPIWTPLIPASFAAKDVEVFGSDVPMERPGQPVEVAPSYLYLASDD-STYVTGQTIHVNGGTIVNG 285          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: YAY8_SCHPO (Uncharacterized oxidoreductase C4H3.08 OS=Schizosaccharomyces pombe GN=SPAC4H3.08 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.509e-29
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIVN 295
            LDYTSTKGAI AFTRGL+ Q  + GIRVN VAPGPI+TPL+ ++F +E+  +  +QVP+ R GQP+EVA C++FLAC+    Y+TGQ LHPNGGT++N
Sbjct:  190 LDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPLVSSTFPKEK-IELSDQVPLGRMGQPVEVASCYLFLACSD-GGYMTGQTLHPNGGTVIN 285          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 3.623e-28
Identity = 62/97 (63.92%), Postives = 71/97 (73.20%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIV 292
            +DYT+TKGAI AFTR +A   V+ GIRVN VAPGPIWTPLIPA+F EE  AQFG   PM R GQP+E   C+V LA +  SSY+TGQ LH NGG  V
Sbjct:  189 IDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEETVAQFGQDTPMGRPGQPVEHVGCYVLLASDE-SSYMTGQTLHVNGGNFV 284          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.522e-26
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPLIPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGGTIVN 295
            +DY+STKGAIV+FTR +A    ++GIRVN VAPGPIWTPLIPA+F EE+  Q G   PM R GQP+E A  +V LA +  SSY+TGQ +H NGG  ++
Sbjct:  192 IDYSSTKGAIVSFTRSMAKSLADKGIRVNAVAPGPIWTPLIPATFPEEKVKQHGLDTPMGRPGQPVEHAGAYVLLASDE-SSYMTGQTIHVNGGRFIS 288          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: YGHA_ECOLI (Uncharacterized oxidoreductase yghA OS=Escherichia coli (strain K12) GN=yghA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.515e-21
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPL-IPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGG 283
            LDY +TK AI+ ++RGLA Q  E+GIRVN VAPGPIWT L I    T+++  QFG Q PMKRAGQP E+AP +V+LA    SSY+T +V    GG
Sbjct:  197 LDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE-SSYVTAEVHGVCGG 290          
BLAST of CX675993 vs. ExPASy Swiss-Prot
Match: YGHA_ECO57 (Uncharacterized oxidoreductase yghA OS=Escherichia coli O157:H7 GN=yghA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.515e-21
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 2
Query:    2 LDYTSTKGAIVAFTRGLALQQVERGIRVNGVAPGPIWTPL-IPASFTEEETAQFGNQVPMKRAGQPIEVAPCFVFLACNHCSSYITGQVLHPNGG 283
            LDY +TK AI+ ++RGLA Q  E+GIRVN VAPGPIWT L I    T+++  QFG Q PMKRAGQP E+AP +V+LA    SSY+T +V    GG
Sbjct:  197 LDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE-SSYVTAEVHGVCGG 290          
The following BLAST results are available for this feature:
BLAST of CX675993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GRDH1_ARATH4.710e-4483.67Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
GRDH2_ARATH2.188e-4177.55Glucose and ribitol dehydrogenase homolog 2 OS=Ara... [more]
GRDH_DAUCA2.503e-3775.00Glucose and ribitol dehydrogenase OS=Daucus carota... [more]
GRDH_ORYSJ1.622e-3676.77Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
YHXC_BACSU4.572e-3162.63Uncharacterized oxidoreductase yhxC OS=Bacillus su... [more]
YAY8_SCHPO2.509e-2961.22Uncharacterized oxidoreductase C4H3.08 OS=Schizosa... [more]
GS39_BACSU3.623e-2863.92General stress protein 39 OS=Bacillus subtilis GN=... [more]
YHDF_BACSU1.522e-2658.16Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
YGHA_ECOLI2.515e-2156.84Uncharacterized oxidoreductase yghA OS=Escherichia... [more]
YGHA_ECO572.515e-2156.84Uncharacterized oxidoreductase yghA OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66C04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C04-F8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675993 ID=CX675993; Name=CX675993; organism=Citrus sinensis; type=EST; length=494bp
GCTTGATTACACATCAACAAAAGGAGCCATTGTGGCATTCACGAGAGGGC
TTGCTCTGCAACAAGTTGAAAGAGGGATACGAGTCAATGGCGTGGCGCCT
GGACCCATTTGGACTCCATTGATCCCTGCATCGTTCACTGAAGAAGAGAC
TGCCCAGTTTGGAAACCAAGTGCCTATGAAGAGAGCCGGCCAGCCTATTG
AGGTTGCTCCTTGCTTTGTGTTCCTCGCTTGTAACCATTGCTCTTCTTAC
ATAACCGGCCAAGTCCTCCACCCTAATGGTGGCACTATTGTGAATGGTTA
ATGGGTTTTTTTGAAGGCAGCCGGTGTTTTCTTTTTTTTTTTCAACCCCC
TCTTCCCTTTCGTATTTATTGGGGCATCTGTTTAGCCTTTTTGTATGTAT
AAGTAGCCGCTAAGCTAACTGAATGCTTGGTGTTAAAAATGTTATGCCAT
GTCATGTACTTGCAAGAAATAACATCACGGTTTATGTGAAAAAA
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