CN189086

Overview
NameCN189086
Unique NameCN189086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189086_ssr66 microsatellite CN189086_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
CN189086_ssr564 microsatellite CN189086_ssr564:564..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2677 contig Csv1_Contig2677:212..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189086 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 3 
Query:    6 WKSKVLPRIKKVFQKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 386
            WK+KVL  + K+F K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
[Close]
BLAST of CN189086 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 3 
Query:    6 WKSKVLPRIKKVFQKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 386
            WK+KVL  + K+F K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
The following BLAST results are available for this feature:
BLAST of CN189086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ7.066e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI7.066e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189086 ID=CN189086; Name=CN189086; organism=Citrus sinensis; type=EST; length=710bp
GCCCGTGGAAATCCAAGGTCCTCCCAAGGATCAAGAAAGTTTTCCAGAAA
AACGGAACCAAGAAAGCTGCTGCTGCTGAGGCTTGCAAGTCCTTTGATGA
TTCAAAGGAAGAAATCAATAAAGAGTTTGAAGAGAAGAAGCCTGAGCTCC
AACCTAAAGTGGTCGAAATCTATGAAGCTTCTTCAGCTGAAATCAAGACC
CTGGTCAAGGATCGCAAGGAGGATGGACTTAAGAAGCACTCCACTGCTGT
GCACAAGTTACTTGAAGAACTCGTTAAAATCGAGTTTCCAGGATCAAAAG
CAGTAAGTGAAGCATCGTCAAAGTTTGGGGCAGCCTCTGTTCCGGGGCCA
GTTTTCTTCATATTTGAGAAGGTCTCAACGTTTATTGTTACTGAAGAAAA
AGCAGCAGAGCCAGCAACCGCCGCAGCAGGAGAAGAAACAAAACCAGAAC
AAGAGACAACAAGTAGTAGTACCGCCGCAGTCACAGAGAAGGACGACGTA
GTTGTTGAGGAAGAGAAGAAAGAAGAGGCCCCCGCCGGCCCTGAGAAAAC
TGAGCCGGCAGAAGCCGCCGCCGCCCCAGCCCCAACTGAGCCTCTTCCTG
CCGCCGCCAAGGAGGACCAACCAGCTGCTGCAGAGCCACCAAAGCCTTGA
GAACATGCATCAACTGACAAGACAAATTCATATCCATATATACATAGATA
TATATTTCAT
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