CX675987

Overview
NameCX675987
Unique NameCX675987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.472e-96
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = -2
Query:  224 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 817
            LR DFHVAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLE+RESGST+ VVA QTKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:   56 LRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.229e-96
Identity = 170/198 (85.86%), Postives = 187/198 (94.44%), Query Frame = -2
Query:  224 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 817
            LR+DFHVAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRALLNESN+FVGDK AYALSQGLKVIACVGETLEQRE+GST++VVA QTKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:   56 LRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 344.354 bits (882), Expect = 5.155e-94
Identity = 171/196 (87.24%), Postives = 180/196 (91.84%), Query Frame = -2
Query:  230 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 817
            LR +FHVAAQNCWV+KGGAFTGEVSAEMLVNL +PWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLEQRE+GST+ VVA QTKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:   56 LRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 3.341e-93
Identity = 167/198 (84.34%), Postives = 185/198 (93.43%), Query Frame = -2
Query:  224 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 817
            LRSDF VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL+QGLKVIACVGETLE+RE+GST+ VVA QTKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:   56 LRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 6.302e-92
Identity = 170/196 (86.73%), Postives = 180/196 (91.84%), Query Frame = -2
Query:  230 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 817
            LR +  VAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYALSQGLKVIACVGETLEQRESGST+ VVA QTKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:   56 LRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 8.230e-92
Identity = 166/192 (86.46%), Postives = 181/192 (94.27%), Query Frame = -2
Query:  224 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 799
            VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERRALLNE+N+FVGDKVAYALSQGLKVIACVGETLEQRE+G+T+ VVA QTKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 333.954 bits (855), Expect = 6.967e-91
Identity = 166/196 (84.69%), Postives = 181/196 (92.35%), Query Frame = -2
Query:  230 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 817
            LR +  VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GST+ VVAEQTKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:   56 LRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 325.479 bits (833), Expect = 2.478e-88
Identity = 162/196 (82.65%), Postives = 176/196 (89.80%), Query Frame = -2
Query:  230 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 817
            LR +  VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GST+ VVAEQTKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:   56 LRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.251e-72
Identity = 140/199 (70.35%), Postives = 155/199 (77.89%), Query Frame = -2
Query:  227 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 817
            L+ +  VAAQNCWV+KGGAFTGEVSA+ML NL I WVILGHSERR LL ESN+FVG K AYA S+GL VIAC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:   56 LKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
BLAST of CX675987 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.008e-71
Identity = 128/192 (66.67%), Postives = 152/192 (79.17%), Query Frame = -2
Query:  227 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 799
            ++AQNCW+ KGGAFTGE+S E L +L   WVILGHSERR ++ E N+F+G K AYAL+QG+ VIAC+GE LE+RE+G T  V  +Q KA A+ + +WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  128 ISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKK 319          
The following BLAST results are available for this feature:
BLAST of CX675987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY2.472e-9687.88Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_COPJA3.229e-9685.86Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_MAIZE5.155e-9487.24Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH3.341e-9384.34Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_ORYSJ6.302e-9286.73Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_LACSA8.230e-9286.46Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_SECCE6.967e-9184.69Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU2.478e-8882.65Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_STELP3.251e-7270.35Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL8.008e-7166.67Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C01-F2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675987 ID=CX675987; Name=CX675987; organism=Citrus sinensis; type=EST; length=875bp
TTAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAAGTTTCAAA
TCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTAACTT
ATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATTACAA
CGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCAAGCC
GAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACTTGAT
AATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAATCCAT
CCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTACAGAA
CCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACATTGTC
TTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGG
TTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAACACA
ACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTTCAGC
CACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAA
CACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTTATCT
CCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAATGACC
AAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTAACTT
CCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGCAACA
TGGAAATCAGACCGCAACACACTCTTTGACAAAGGGAAGAACACAAACGG
AGGGCTTACAACAACCTCCACAACA
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