CN189075

Overview
NameCN189075
Unique NameCN189075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:313..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189075 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.992e-19
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = -2 
Query:  546 EDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 767
            +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   75 DDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN189075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.992e-1954.05Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189075 ID=CN189075; Name=CN189075; organism=Citrus sinensis; type=EST; length=774bp
TTTTATTANAACCCAACATGATTAATAATATATACACAATTGCGGATTGC
CCACATAACAAGAAAAACACTCTATCAAAGAAAAAGGTCAAAAGAACCTC
CAAGAGTGAGTAACAACTTTATTTTTAACTTAATAGAAGGAAAAATGAAA
GGTAGTAGTTTCAGCTTTTGAGTTGGAAGTAGGCAAATTCACAGCAAGAT
CAATCAAATTGATCCTTAATTGATAAATTAATGTGAGTCCCATTGATTAG
TCCAGTCTGCTTCACTTCCCACACGTGGAATGCTGTTGATCCTAGTGTAT
TTATCAACCTTGAAATTGGCTCCACACATGACACCTTCACTATCTACTCT
TGGCATTGCCCTTATCTTGTTCATTGGATGCTCAAAGCTCATCAATCCTC
CTTCACTGTGGAACATGCACCCCTGTGGGAAGGGAGCAAATGACTTGGCA
CATCCCTCTTTGATGACCTCCAAGTCATCAGATATGACCACAGATCCATC
GGCTGCAATTCCCCAGTACAGCTTCACTCCCCCATCAGAACCCAGAGCAG
TGAAGACCGTGCCGGCCTTGCTATCGTAGACCACAAAAGCAAAGCTCCCA
TCAAGATCCTTGACAACCTGATCAGCTGGGTAAGGACCCCGGTCTCTGAG
CGTACGATACGCCTCTATCACAAACATGGCCTCATCGGTTCCCTTTGACA
ACCCATATTGCCTGATCAGCGAGCACAAGTTGTTCAAGGACCCCATGAAC
AGACAGTATATGTCCTCAAACCCG
back to top