CX675984

Overview
NameCX675984
Unique NameCX675984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.101e-77
Identity = 143/257 (55.64%), Postives = 186/257 (72.37%), Query Frame = 2
Query:    2 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR-NGKGVDELLDSMKADGIDEDEETKEIL 769
            +DW+TYA AA FYI     D+A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK  CKR IN+DY+T+L++L+K+    EAE+VL EW+ SGN YD R+PN VI GY    + + AEA+LEDL  +GKATTP SW +VA  Y + G  E  F+CMK AL V V  + W+P   ++TS+LS +GDEGS+++VE+FVA+LR  I +N+QMYHA +KA+IR  G+ +D LL  MK D I+ DEET  IL
Sbjct:  230 MDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.883e-35
Identity = 91/255 (35.69%), Postives = 141/255 (55.29%), Query Frame = 2
Query:    2 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVD-ELLDSMKADGIDEDEETK 760
            LDW TYA  A+ YIKA L +KA ++L+K+E+ +  QK    Y  L+S Y + G K EV RLW L K     Y N  YI+++ AL+K+ + EE EK+++EWE   + +D RIP+ +I GYC  G+++ AE ++  LV+K +    ++W  +A GY  AGK E+  +  K A+   V   GW+P   V+ S +  L  EG  +D+E     LR +       Y   +     NG G+  +++D+M      E+ E +
Sbjct:  243 LDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFY-NTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIE--VSKPGWRPHQVVLMSCVDYL--EGQ-RDMEGLRKILRLLSERGHISYDQLLYD--MNGAGLSWKIVDAMGKGRYVEEREVR 489          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.199e-33
Identity = 74/242 (30.58%), Postives = 130/242 (53.72%), Query Frame = 2
Query:    8 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKAD 733
            WS+  + A+ YIK+   +KA  VL+ AE+ L + + +GY FLI+LYASLGNK  V+RLW++ K+ C R    +YI +L +L+K G+ EEAE+V  EWE    +YD R+ N ++  Y  NG ++ AE++   ++E+G      +W ++  G+      E+    M     V +    W+P   ++ +I      E  +++  A+V  L  +   +  +Y   ++ +    +   ++ + MK D
Sbjct:  249 WSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVF-VLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLD 489          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.057e-32
Identity = 76/258 (29.46%), Postives = 139/258 (53.88%), Query Frame = 2
Query:    5 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCT 778
            DW TY+   + Y K + ++KA   LK+ E+ + +K+ + Y  LISL+A+LG+K  V   W   K++ K+  + +Y++M+ A++KLGE E+A+ +  EWE    + D RIPN ++  Y N   V   E   E +VEKG   + ++W ++   Y      E+   C   A+      K W  + +++     +L ++G+V+  E  +  L+    +N Q+Y++ ++   + G+    + + M  D ++ DEETKE++  T
Sbjct:  265 DWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAID---SVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLT 519          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.381e-32
Identity = 77/260 (29.62%), Postives = 131/260 (50.38%), Query Frame = 2
Query:    5 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG----WKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 769
            DW+TY++ A  Y+ A L  KA   L++ E +  Q+D   Y FLI+LY  LG  +EV R+W   + A  +  N  Y+ M++ L+KL +   AE + KEW+ + ++YD RI N +I  Y   GL+Q A  + E    +G      +W +    Y  +G   R  +CM  A+S+   GKG    W P P+ + +++S    +  V   E  +  L+     +  +++   I+     GK    +   +K + ++ +E TK++L
Sbjct:  228 DWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSI---GKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLL 484          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.803e-31
Identity = 72/224 (32.14%), Postives = 121/224 (54.02%), Query Frame = 2
Query:    5 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG-KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI 673
            +W+T+++ A  YIK    +KA D L+K E R+  ++ I Y++L+SLY SLGNK E+ R+W + K+      N  Y  ++ +L+++G+ E AEKV +EW    +SYD RIPN ++  Y  N  ++ AE + + +VE G   + ++W ++A G+           C++ A S   EG   W+P   +++       +E  V   EA +  LR    +  + Y A I
Sbjct:  274 NWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFS--AEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.282e-27
Identity = 75/254 (29.53%), Postives = 119/254 (46.85%), Query Frame = 2
Query:    8 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 769
            W+T+A+ A  YIK  L  KA + LK  E  +       Y+FLI+LY  + N SEV R+WDL K       N  Y+TML AL KL + +  +KV  EWE +  +YD R+ N  I  Y    + + AEA+    ++K K     +  ++        + +   +  +AA  V  + K W    ++I+S      +   V   E F   L    P++ + Y   +K  +  GK   ++   ++  GI  DEE + +L
Sbjct:  246 WNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAA--VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.084e-24
Identity = 68/255 (26.67%), Postives = 120/255 (47.06%), Query Frame = 2
Query:    8 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 769
            W+T+++ A  Y KA L +KA   LK  EE++   +   ++FL+SLYA +    EV R+W+  K A     N  Y+ ML+A+ KLG+ +  +K+  EWE    +YD R+ N  I  Y    + + AE IL+  ++K K     +  ++     +  K +   + ++AA+S   E K  W    ++++           V   E F   L    P++ +     IK      K   ++ + +    I+  EE +++L
Sbjct:  278 WNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLL 532          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.175e-15
Identity = 45/140 (32.14%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    2 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 418
            L+W T    A  Y++A    KA  +L+  E+ ++QK     Y+ L+ LY   GN+ EVLR+W L K+      N  Y T++ +L+K+ +   AE++ K WE     +D RIP  +  GY + G+ + AE ++     K +
Sbjct:  242 LEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDR 381          
BLAST of CX675984 vs. ExPASy Swiss-Prot
Match: PPR50_ARATH (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 57/199 (28.64%), Postives = 93/199 (46.73%), Query Frame = 2
Query:    5 DWS------TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI---TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILS 574
            DWS      TY +    Y +A  +D+A  +  +  ++      + YN L+  Y+ +G   +VL LW   K   KR +N D I   T+LEAL KLG+  EA K+ +     G   DT   N +I G C    V  A+ IL+++          ++  ++ GY+  G  +  F     A+  Y+E KG  P  ++  +++S
Sbjct:  394 DWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLW---KMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAF-----AVKEYMERKGIFPTIEMYNTLIS 584          
The following BLAST results are available for this feature:
BLAST of CX675984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PP334_ARATH4.101e-7755.64Pentatricopeptide repeat-containing protein At4g21... [more]
PP166_ARATH3.883e-3535.69Pentatricopeptide repeat-containing protein At2g20... [more]
PP400_ARATH6.199e-3330.58Pentatricopeptide repeat-containing protein At5g27... [more]
PP302_ARATH1.057e-3229.46Pentatricopeptide repeat-containing protein At4g02... [more]
PPR86_ARATH1.381e-3229.62Pentatricopeptide repeat-containing protein At1g60... [more]
PPR3_ARATH5.803e-3132.14Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH2.282e-2729.53Pentatricopeptide repeat-containing protein At4g01... [more]
PPR4_ARATH3.084e-2426.67Pentatricopeptide repeat-containing protein At1g02... [more]
PPR61_ARATH1.175e-1532.14Putative pentatricopeptide repeat-containing prote... [more]
PPR50_ARATH6.033e-1228.64Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66B09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675984 ID=CX675984; Name=CX675984; organism=Citrus sinensis; type=EST; length=836bp
TTTGGACTGGAGCACATATGCCTCTGCTGCCCATTTTTACATAAAAGCTA
ACCTTATTGATAAAGCATCAGATGTTTTGAAGAAAGCAGAAGAGAGACTT
GAGCAGAAAGATGGGATTGGCTATAACTTTTTGATATCACTCTATGCTAG
TTTAGGGAATAAGTCTGAGGTCCTGAGATTGTGGGATTTAGAGAAAACAG
CTTGTAAGAGGTATATCAACCGGGACTACATCACCATGCTGGAAGCTTTG
ATGAAGCTTGGTGAACATGAAGAAGCTGAGAAAGTGCTAAAGGAGTGGGA
ATTATCTGGCAATTCCTATGATACCCGCATACCCAATGCTGTCATTATTG
GATACTGTAATAATGGATTGGTCCAGAATGCAGAAGCCATTCTTGAAGAC
TTGGTGGAGAAAGGAAAGGCTACCACCCCTAACAGTTGGGCAGTTGTTGC
AGCCGGTTACTTTGATGCAGGTAAGACAGAGAGAGGTTTTCAGTGCATGA
AGGCTGCCCTCTCTGTATATGTGGAGGGAAAGGGATGGAAACCTGACCCG
AAGGTGATTACAAGTATTTTGAGTAAGCTGGGTGATGAAGGTAGCGTTCA
AGACGTGGAAGCTTTTGTGGCTGCGCTGAGGACTGTCATCCCTATGAACA
GGCAAATGTATCATGCGTTCATAAAGGCAAATATAAGAAATGGGAAGGGA
GTGGATGAGCTTTTGGACAGCATGAAAGCTGACGGAATAGACGAGGATGA
GGAAACAAAGGAAATACTTGTGTGTACGATGGANAAGTAAATTTAATTAC
AAGTTTATTCTTTTCCTCCCAGCAAACAATGCGGCC
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