CX675983

Overview
NameCX675983
Unique NameCX675983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.016e-71
Identity = 135/245 (55.10%), Postives = 176/245 (71.84%), Query Frame = -2
Query:  183 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR-NGKGVDELLDSMKADGIDEDEETKEIL 914
            YI     D+A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK  CKR IN+DY+T+L++L+K+    EAE+VL EW+ SGN YD R+PN VI GY    + + AEA+LEDL  +GKATTP SW +VA  Y + G  E  F+CMK AL V V  + W+P   ++TS+LS +GDEGS+++VE+FVA+LR  I +N+QMYHA +KA+IR  G+ +D LL  MK D I+ DEET  IL
Sbjct:  242 YIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 72/232 (31.03%), Postives = 125/232 (53.88%), Query Frame = -2
Query:  219 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKAD 914
            YIK+ F +KA  VL+ AE+ L + + +GY FLI+LYASLGNK  V+RLW++ K+ C R    +YI +L +L+K G+ EEAE+V  EWE    +YD R+ N ++  Y  NG ++ AE++   ++E+G      +W ++  G+      E+    M     V +    W+P   ++ +I      E  +++  A+V  L  +   +  +Y   ++ +    +   ++ + MK D
Sbjct:  259 YIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVF-VLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLD 489          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 83/243 (34.16%), Postives = 132/243 (54.32%), Query Frame = -2
Query:  192 YIKANFIDKASDVLKKAEERLE-QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVD-ELLDSMKADGIDEDEETK 914
            YIKA   +KA ++L+K+E+ +  QK    Y  L+S Y + G K EV RLW L K     Y N  YI+++ AL+K+ + EE EK+++EWE   + +D RIP+ +I GYC  G+++ AE ++  LV+K +    ++W  +A GY  AGK E+  +  K A+   V   GW+P   V+ S +  L  EG  +D+E     LR +       Y   +     NG G+  +++D+M      E+ E +
Sbjct:  255 YIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFY-NTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIE--VSKPGWRPHQVVLMSCVDYL--EGQ-RDMEGLRKILRLLSERGHISYDQLLYD--MNGAGLSWKIVDAMGKGRYVEEREVR 489          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-30
Identity = 72/249 (28.92%), Postives = 134/249 (53.82%), Query Frame = -2
Query:  168 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTME 914
            Y K + ++KA   LK+ E+ + +K+ + Y  LISL+A+LG+K  V   W   K++ K+  + +Y++M+ A++KLGE E+A+ +  EWE    + D RIPN ++  Y N   V   E   E +VEKG   + ++W ++   Y      E+   C   A+      K W  + +++     +L ++G+V+  E  +  L+    +N Q+Y++ ++   + G+    + + M  D ++ DEETKE++  T +
Sbjct:  276 YAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAID---SVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQ 521          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.043e-28
Identity = 71/249 (28.51%), Postives = 122/249 (49.00%), Query Frame = -2
Query:  183 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG----WKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 914
            Y+ A    KA   L++ E +  Q+D   Y FLI+LY  LG  +EV R+W   + A  +  N  Y+ M++ L+KL +   AE + KEW+ + ++YD RI N +I  Y   GL+Q A  + E    +G      +W +    Y  +G   R  +CM  A+S+   GKG    W P P+ + +++S    +  V   E  +  L+     +  +++   I+     GK    +   +K + ++ +E TK++L
Sbjct:  239 YVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSI---GKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLL 484          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.043e-28
Identity = 69/213 (32.39%), Postives = 113/213 (53.05%), Query Frame = -2
Query:  279 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG-KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI 914
            YIK    +KA D L+K E R+  ++ I Y++L+SLY SLGNK E+ R+W + K+      N  Y  ++ +L+++G+ E AEKV +EW    +SYD RIPN ++  Y  N  ++ AE + + +VE G   + ++W ++A G+           C++ A S   EG   W+P   +++       +E  V   EA +  LR    +  + Y A I
Sbjct:  285 YIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFS--AEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 70/244 (28.69%), Postives = 111/244 (45.49%), Query Frame = -2
Query:  183 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 914
            YIK     KA + LK  E  +       Y+FLI+LY  + N SEV R+WDL K       N  Y+TML AL KL + +  +KV  EWE +  +YD R+ N  I  Y    + + AEA+    ++K K     +  ++        + +   +  +AA  V  + K W    ++I+S      +   V   E F   L    P++ + Y   +K  +  GK   ++   ++  GI  DEE + +L
Sbjct:  256 YIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAA--VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 64/245 (26.12%), Postives = 112/245 (45.71%), Query Frame = -2
Query:  183 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 914
            Y KA   +KA   LK  EE++   +   ++FL+SLYA +    EV R+W+  K A     N  Y+ ML+A+ KLG+ +  +K+  EWE    +YD R+ N  I  Y    + + AE IL+  ++K K     +  ++     +  K +   + ++AA+S   E K  W    ++++           V   E F   L    P++ +     IK      K   ++ + +    I+  EE +++L
Sbjct:  288 YTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLL 532          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.649e-13
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  534 YIKANFIDKASDVLKKAEERLEQKD-GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 914
            Y++A    KA  +L+  E+ ++QK     Y+ L+ LY   GN+ EVLR+W L K+      N  Y T++ +L+K+ +   AE++ K WE     +D RIP  +  GY + G+ + AE ++     K +
Sbjct:  254 YLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDR 381          
BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PPR50_ARATH (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.439e-11
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = -2
Query:  378 YIKANFIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI---TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILS 914
            Y +A ++D+A  +  +  ++      + YN L+  Y+ +G   +VL LW   K   KR +N D I   T+LEAL KLG+  EA K+ +     G   DT   N +I G C    V  A+ IL+++          ++  ++ GY+  G  +  F     A+  Y+E KG  P  ++  +++S
Sbjct:  411 YCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLW---KMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAF-----AVKEYMERKGIFPTIEMYNTLIS 584          
The following BLAST results are available for this feature:
BLAST of CX675983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PP334_ARATH1.016e-7155.10Pentatricopeptide repeat-containing protein At4g21... [more]
PP400_ARATH2.290e-3131.03Pentatricopeptide repeat-containing protein At5g27... [more]
PP166_ARATH3.307e-3034.16Pentatricopeptide repeat-containing protein At2g20... [more]
PP302_ARATH9.623e-3028.92Pentatricopeptide repeat-containing protein At4g02... [more]
PPR86_ARATH4.043e-2828.51Pentatricopeptide repeat-containing protein At1g60... [more]
PPR3_ARATH4.043e-2832.39Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH7.891e-2428.69Pentatricopeptide repeat-containing protein At4g01... [more]
PPR4_ARATH4.787e-2126.12Pentatricopeptide repeat-containing protein At1g02... [more]
PPR61_ARATH1.649e-1332.03Putative pentatricopeptide repeat-containing prote... [more]
PPR50_ARATH3.439e-1128.57Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66B09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66B09-D18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675983 ID=CX675983; Name=CX675983; organism=Citrus sinensis; type=EST; length=915bp
TAAAATTATTATATATTTGCAAACAATAACAAAATTTTGCATTGGGAAAA
TCGTCTACAACTTAAATAATATTCAGATCCTACGTGAGAGAACACATGTT
TGGACAGCCAAAATCGGCCGCATTGTTTGCTGGGAGGAAAAGAATAAACT
TGTAATTAAATTTACTTTTCCATCGTACACACAAGTATTTCCTTTGTTTC
CTCATCCTCGTCTATTCCGTCAGCTTTCATGCTGTCCAAAAGCTCATCCA
CTCCCTTCCCATTTCTTATATTTGCCTTTATGAACGCATGATACATTTGC
CTGTTCATAGGGATGACAGTCCTCAGCGCAGCCACAAAAGCTTCCACGTC
TTGAACGCTACCTTCATCACCCAGCTTACTCAAAATACTTGTAATCACCT
TCGGGTCAGGTTTCCATCCCTTTCCCTCCACATATACAGAGAGGGCAGCC
TTCATGCACTGAAAACCTCTCTCTGTCTTACCTGCATCAAAGTAACCGGC
TGCAACAACTGCCCAACTGTTAGGGGTGGTAGCCTTTCCTTTCTCCACCA
AGTCTTCAAGAATGGCTTCTGCATTCTGGACCAATCCATTATTACAGTAT
CCAATAATGACAGCATTGGGTATGCGGGTATCATAGGAATTGCCAGATAA
TTCCCACTCCTTTAGCACTTTCTCAGCTTCTTCATGTTCACCAAGCTTCA
TCAAAGCTTCCAGCATGGTGATGTAGTCCCGGTTGATATACCTCTTACAA
GCTGTTTTCTCTAAATCCCACAATCTCAGGACCTCAGACTTATTCCCTAA
ACTAGCATAGAGTGATATCAAAAAGTTATAGCCAATCCCATCTTTCTGCT
CAAGTCTCTCTTCTGCTTTCTTCAAAACATCTGATGCTTTATCAATAAAG
TTAGCTTTTATGTAA
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