CN189065

Overview
NameCN189065
Unique NameCN189065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189065 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 63/174 (36.21%), Postives = 79/174 (45.40%), Query Frame = -1
Query:  321 SPDSGRNSSRSPYKKERAAIGHVRGPSRSPYRRDRGSPENGHGS-SPSPYRKGKPSPN-------------------------NGRGPSRSP--------------YE--RERPSPENXXXXXXXXXXXXXXXPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 716
            SPD  R S  SPY++ER +  + RG S   ++R+R SP+ G G  SPSPY++ + SP+                          GRG SRSP              YE  RE  SP                 P+NG+V SP  + E     GYDGADSPI E   SRSPPAE+
Sbjct:  185 SPDRRRRSP-SPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRES-PSRSPPAEE 356          
BLAST of CN189065 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 54/161 (33.54%), Postives = 75/161 (46.58%), Query Frame = -1
Query:  321 RNSSRSPYKKERAAIGHVRGPSR-SPYRRDRGSPENGHGSSPSPYRK---GKP--------------------------SPNNGR---GPSRSPYERERP-SPENXXXXXXXXXXXXXXXPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 701
            R  S SPYK+ER +  + RG S  + YR++R SP+ G   SPSPY+K   G P                          SPNN R    P+ SP+++E P +                  P+NG+V SP S+       GYDGA+SP+ +    RSPPA++
Sbjct:  190 RRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 350          
The following BLAST results are available for this feature:
BLAST of CN189065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSP41_ARATH2.910e-1436.21Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP40_ARATH7.167e-1333.54Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189065 ID=CN189065; Name=CN189065; organism=Citrus sinensis; type=EST; length=719bp
TTTTTTTTACAATGGCTCTTANTTCTTACCACAATTAAAATCGTTCTTGA
AGTTTTCAAGCAGAGACATGATAAAATGCATTAACAATGTGAAATTAAGG
TGATGCATAACAACATACTCCATACAAATGGCTACTTAGTTCATTACCAA
CAATTAAAATCGTTCTTGAAGTTTGAGCAGAGACAGCTCTAAACTAGAAA
CTGAACTAATTAGGACCTACATCACAAGTTCCAAAGCAGATATTACGATC
TAATTGGGATGGTTGCTGTAAAATGGCCTGGTCAGTTCTGTGACCAGGGC
TCCTCTGGGAACCATGTTCAGTCCTCGGCTGGAGGTGAACGACTGCGGTA
TCTCTCATTGATAGGGCTGTCAGCTCCATCATAACCAGGGCTATCCCTAG
GTTCAGGCATTGAATTTGGACTGGGAACACGACCATTGTCAGGGCTAGGC
CTCTCTCTTCTATAGGGACTTCGGCTGCCTCCACGACCATTTTCAGGACT
AGGCCTCTCTCTTTCATATGGACTGCGGCTGGGGCCACGACCATTGTTAG
GACTAGGTTTCCCCTTACGATAAGGACTAGGACTGGATCCATGACCATTC
TCAGGACTACCTCTGTCCCTCCGATAAGGACTACGGCTAGGGCCTCGAAC
ATGACCAATAGCAGCTCTCTCTTTCTTGTAAGGACTGCGGCTGGAGTTAC
GACCGGAATCAGGGCTACC
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