CN182440

Overview
NameCN182440
Unique NameCN182440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase 1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.537e-51
Identity = 95/118 (80.51%), Postives = 111/118 (94.07%), Query Frame = -3
Query:  225 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 578
            S+ NQVRASHILIKHQGSRRKASWKDPEG++I NTTR+SAVSQL+A+RDDI+SGKAKFD++A+R SDCSSAKRGGDLG FGR QMQKPFEEAT+ LK+GE+S++VDTDSGVH+I RTG
Sbjct:    4 SAGNQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKFDDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.108e-50
Identity = 93/118 (78.81%), Postives = 111/118 (94.07%), Query Frame = -3
Query:  228 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 581
            M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct:    1 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 118          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.455e-44
Identity = 85/117 (72.65%), Postives = 103/117 (88.03%), Query Frame = -3
Query:  225 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 575
            S+ +VRASHILIKHQGSRRK+SWKDP+G +IS TTR+ AVSQLQ++R +++S  A F ++ASR S CSSAKRGGDLG FGRGQMQKPFEEAT+ LK+GEIS++VDTDSGVH+I RTG
Sbjct:    2 SSEKVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRTG 118          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: DOD_DROME (Protein dodo OS=Drosophila melanogaster GN=dod PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = -3
Query:  231 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 569
            ++V   H+L+KH+GSRR +SW++         T+E A   L+  R+ IV  +A FDE+A   SDCSSAKRGGDLG FGRGQMQ  FE+A + L + ++S +VD+DSG+H+I+R
Sbjct:   56 DEVHCLHLLVKHKGSRRPSSWREAN----ITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_RHIOR (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus oryzae GN=pin1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.553e-25
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = -3
Query:  228 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 566
            +VRASH+LIK + SRR +SW++         ++E A+  L   +  I SG+     +A+  SDC+SAKRGGDLG F RGQMQKPFEEAT+ L++GE+S+ V TDSGVHLI+RT
Sbjct:   41 RVRASHLLIKSRESRRPSSWREEH----ITRSKEEALKILTDFQHKIESGQETLSALATNYSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRT 149          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_MACFA (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Macaca fascicularis GN=PIN1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.655e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  228 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 566
            +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens GN=PIN1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.655e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  228 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 566
            +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus GN=PIN1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.655e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  228 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 566
            +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: PIN1_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.814e-24
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  228 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 566
            +VR SH+L+KH  SRR +SW+  +       ++E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   56 KVRCSHLLVKHSQSRRPSSWRQEK----ITRSKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164          
BLAST of CN182440 vs. ExPASy Swiss-Prot
Match: SSP1_NEUCR (Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neurospora crassa GN=ssp-1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = -3
Query:  231 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 566
            ++R +H+L+KH  SRR +SW++ E       T++ A++ LQ     I SG     E+A   SDCSSA++ GDLG FGRG MQK FE+A + LK GEIS +VDT SG+HLI R
Sbjct:   73 KIRCAHLLVKHNQSRRPSSWRESE----ITRTKQEALTTLQGFEQRIKSGSISLGELALTESDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISGIVDTASGLHLIER 180          
The following BLAST results are available for this feature:
BLAST of CN182440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIN1_MALDO3.537e-5180.51Peptidyl-prolyl cis-trans isomerase 1 OS=Malus dom... [more]
PIN1_ARATH5.108e-5078.81Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidops... [more]
PIN1_DIGLA2.455e-4472.65Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis... [more]
DOD_DROME3.015e-2649.56Protein dodo OS=Drosophila melanogaster GN=dod PE=... [more]
PIN1_RHIOR2.553e-2553.10Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizop... [more]
PIN1_MACFA1.655e-2449.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_HUMAN1.655e-2449.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_BOVIN1.655e-2449.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_MOUSE4.814e-2448.67Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
SSP1_NEUCR3.120e-2349.11Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002H07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182440 ID=CN182440; Name=CN182440; organism=Citrus sinensis; type=EST; length=595bp
TTTTTGGAGTCATTCAAGCAAATCCCAAACCACAATCAGCCATGTATAAA
CTACATGCTTTAAGAAAACAACTCCAACGAGCCAAATATAGCATGGCTCG
CCAGCATTATCATAAGAAGACCAACATTCATCTGAAGTAAAACCAACGAC
AACATTCTTGAATATGTTTCCAGAATATACTGAACAAATCAGTTAATCCA
TTATGAGCTTATCATTAATAATCAACCAGTCCTCATGATAAGGTGAACCC
CACTATCAGTATCCACAACTTCACTTATCTCACCAATTTTAAGATTATAT
GTTGCCTCCTCAAAAGGCTTCTGCATCTGGCCTCGACCAAAATTACCGAG
ATCACCGCCGCGTTTGGCGGAGCTGCAATCGGAGAGGCGAGAGGCGACTT
CATCGAACTTGGCCTTGCCGGAAACGATGTCGTCTCGGATGGCTTGGAGT
TGAGAGACGGCGCTCTCTCTAGTGGTGTTGCTGATGACTCTACCTTCCGG
ATCCTTCCACGAAGCCTTCCTTCGAGAACCTTGATGCTTGATCAAGATGT
GAGATGCCCTCACCTGATTGGCCGACGACATTTTTGGTTTCTTCT
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