CN189043

Overview
NameCN189043
Unique NameCN189043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_DICDI (Density-regulated protein homolog OS=Dictyostelium discoideum GN=denr PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = -1
Query:  318 KIKKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPT--EKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKKVAA 617
            K KK+   +++IE   RNKRK +T + GL+L+G+KLSDA K + KKF+ G SVVK  +    E ID+QGD   ++V+ I + +P VP + IYF+ED KKV A
Sbjct:  122 KKKKEVKPQIIIEVNQRNKRKHVTKITGLELYGIKLSDAAKVMAKKFSCGCSVVKSISNPNSEDIDIQGDFGEELVDLIEEKYPTVPLSEIYFLEDKKKVKA 223          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_NEUCR (Translation machinery-associated protein 22 OS=Neurospora crassa GN=tma-22 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = -1
Query:  327 KKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKK 608
            K+ +  V I+++ RNKRK +T V GL+ FG++L    K  GKKFATG+SV K P+  E+I VQGD+S +I EFI + +  VPE  I  +ED KK
Sbjct:   88 KRANSVVTIKRIERNKRKYVTSVSGLEAFGLELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGDVSGEIEEFILEKYKEVPEDNIELVEDKKK 181          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_CHAGB (Translation machinery-associated protein 22 OS=Chaetomium globosum GN=TMA22 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  315 VVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKKVAAA 590
            V I+++ RNKRK +T V GL+ FG++L    K  GKKFATGASV K P+  E+I VQGD+S +I EF+ + +  +PE  I  +ED KK A+A
Sbjct:   96 VTIKRIERNKRKFVTSVTGLEAFGLELKKVAKDFGKKFATGASVTKVPSGGEEIVVQGDVSGEIEEFLLEKYKDIPEDNIELVEDKKKKASA 187          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_SCHPO (Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe GN=tma22 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = -1
Query:  330 KKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGK 608
            K+ + +V+I+ + R KRK +T V+GLD FG++   A K L  KFATGASV K   +K++I VQGD++YDI +FI + +  VPE  I  +ED K
Sbjct:   93 KRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFKEVPEDNIKIVEDTK 185          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_NEOFI (Translation machinery-associated protein 22 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tma22 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  318 KKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKKVAA 611
            ++K + +V I++V RNKRK +T++ GL++ G++     K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ + +   +PE+ I  +ED KK A+
Sbjct:   95 ERKAAAKVQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVQEWLLELYGKEIPESNIELVEDKKKKAS 193          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_ASPFU (Translation machinery-associated protein 22 OS=Aspergillus fumigatus GN=tma22 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = -1
Query:  327 KKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKK 611
            ++K + +V I++V RNKRK +T++ GL++ G++     K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ + +   +PE+ I  +ED KK
Sbjct:   95 ERKAAAKVQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVKEWLLELYGKEIPESNIELVEDKKK 190          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_ASPCL (Translation machinery-associated protein 22 OS=Aspergillus clavatus GN=tma22 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 42/100 (42.00%), Postives = 70/100 (70.00%), Query Frame = -1
Query:  315 KKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKKVAAA 611
            ++K + +V I++V RNKRK +T++ GL++ G++     K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ + +   +PE+ I  +ED KK +++
Sbjct:   95 ERKAAAKVQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVQEWLLEVYGKELPESNIELVEDKKKKSSS 194          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_COCIM (Translation machinery-associated protein 22 OS=Coccidioides immitis GN=TMA22 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  315 KKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT-WPAVPETAIYFIEDGKKVAAA 611
            ++K + +V I++V RNKRK +T++ GL+  G+      K+LGKKFATG+SV K P   E+I VQGD+  D++E++ +     VPE  +  +ED KK  AA
Sbjct:   99 ERKAAAKVQIKRVERNKRKHVTVIAGLEAHGLDNKKVAKELGKKFATGSSVTKNPAGGEEITVQGDVCEDVLEWLVEVHGKEVPEDNLEIVEDKKKKKAA 198          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_ASPOR (Translation machinery-associated protein 22 OS=Aspergillus oryzae GN=tma22 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 40/96 (41.67%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  327 KKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKK 611
            ++K + +V I++V RNKRK +T++ GL+++G++     K+LGKKFATG+SV +     E+I VQGD+S D+ +++ + +   +PE  I  IED KK
Sbjct:   95 ERKAASKVQIKRVERNKRKHVTVIAGLEVYGLENKKVAKELGKKFATGSSVTRSAAGNEEITVQGDVSDDVQDWLLEVYGKEIPEANIEIIEDKKK 190          
BLAST of CN189043 vs. ExPASy Swiss-Prot
Match: DENR_ASPNC (Translation machinery-associated protein 22 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tma22 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  318 KKKESQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDAFKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKKVAA 611
            ++K + +V I++V RNKRK +T++ GLD++G++     K LGKKFATG+S+ +     E+I VQGD+S D+ E++ + +   +PE  I  IED KK  A
Sbjct:   95 ERKAASKVQIKRVERNKRKHVTVITGLDIYGLENKKIAKDLGKKFATGSSMTRSAGGTEEITVQGDVSDDVKEWLLEVYGKEIPEANIELIEDKKKKKA 193          
The following BLAST results are available for this feature:
BLAST of CN189043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DENR_DICDI1.781e-1948.04Density-regulated protein homolog OS=Dictyostelium... [more]
DENR_NEUCR9.775e-1848.94Translation machinery-associated protein 22 OS=Neu... [more]
DENR_CHAGB9.775e-1850.00Translation machinery-associated protein 22 OS=Cha... [more]
DENR_SCHPO2.844e-1747.31Translation machinery-associated protein 22 OS=Sch... [more]
DENR_NEOFI1.081e-1643.43Translation machinery-associated protein 22 OS=Neo... [more]
DENR_ASPFU2.408e-1643.75Translation machinery-associated protein 22 OS=Asp... [more]
DENR_ASPCL2.408e-1642.00Translation machinery-associated protein 22 OS=Asp... [more]
DENR_COCIM1.195e-1543.00Translation machinery-associated protein 22 OS=Coc... [more]
DENR_ASPOR1.561e-1541.67Translation machinery-associated protein 22 OS=Asp... [more]
DENR_ASPNC1.561e-1542.42Translation machinery-associated protein 22 OS=Asp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189043 ID=CN189043; Name=CN189043; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTCAAATCTCCAGACCATTATATATTTCTCTCCGG
CCAGAAAAGGCAAACAAGGGCAAGGCTTGCTCACAAAAGAAACAAGATAT
ACTAAAAGAAGAAATTCATAAAAAAAACAACAACATAATTAGAGGTCCAC
TGATAGTTTTAAGCTTCACTGATACACAATTTCTCATCTCAGCTGCAAGG
GACTTCTTTCCTCGTACATTTGTACAAAATCCAGCCAAGAAAAAAATGAG
CAGTTTATAGGCTCCTTTTTGTCAAATTGAAACTACCACCCTTTTGAAAA
AGCTCCTAACATTATGCGGCTGCAACCTTTTTCCCGTCTTCAATGAAATA
TATAGCAGTTTCGGGCACAGCAGGCCAGGTGTCTGTAATGAATTCCACAA
TGTCATAGGATATGTCCCCTTGAACATCAATTTGCTCTTTCTCAGTTGGG
CCCTTAACAACAGATGCTCCAGTGGCAAACTTTTTCCCAAGCTTTTTAAA
AGCATCACTAAGTTTAACACCAAACAGGTCCAGGCCCTTCACAATGGTTA
TACATTTGCGCTTGTTGCGTACAACTTTTTCAATAACAACTTCTTGGCTT
TCTTTCTTCTTTATTTTTCCACCAGG
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