CN189040

Overview
NameCN189040
Unique NameCN189040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189040_ssr360 microsatellite CN189040_ssr360:360..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13856 contig Csv1_Contig13856:340..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.984e-47
Identity = 98/141 (69.50%), Postives = 107/141 (75.89%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVN +KFDDKYF K+                           KDDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:   94 TVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.191e-46
Identity = 100/141 (70.92%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV  DKFDDKYF K                            KDDQK+VD  LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:   93 TVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.191e-46
Identity = 100/141 (70.92%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV  DKFDDKYF K                            KDDQK+VD  LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:   93 TVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.008e-45
Identity = 97/141 (68.79%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                            K+DQK+VD  LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:   93 TVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 74/141 (52.48%), Postives = 86/141 (60.99%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVN +KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:   38 TVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 1.013e-29
Identity = 73/141 (51.77%), Postives = 86/141 (60.99%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVN +KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:   38 TVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 73/142 (51.41%), Postives = 86/142 (60.56%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V   K   D YF K+                           K DQK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  156 TVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVN-ADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V  A   +D YFA E                             DQKSVD+ ++  ++    L  YL  +F L+ G  PH+L F
Sbjct:   95 TVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 72/142 (50.70%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNADK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            TVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V   K   D YF K+                           K DQK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  158 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CN189040 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  173 TVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVN-ADKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 595
            T+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV   +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:  144 TILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
The following BLAST results are available for this feature:
BLAST of CN189040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR6.984e-4769.5060S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH1.191e-4670.9260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH1.191e-4670.9260S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL61_ARATH1.008e-4568.7960S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6A_YEAST2.666e-3052.4860S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6B_YEAST1.013e-2951.7760S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6_MOUSE1.788e-2651.4160S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_DICDI1.788e-2647.1860S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_RAT2.336e-2650.7060S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_PIG6.796e-2646.4860S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189040 ID=CN189040; Name=CN189040; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTTTTTTTTGNACCTGAAGAAAACCATTTCATTTGCCTAACATC
ATACCAAAATTTAGATGTCTGATCCCATGAAACAAAGATTACAACTGGTA
AAATAAATTTCAGACAAAACATAACAAGTAGGAAAAAGCAAAGCAATCCT
AAATTGTTTCAACATGTTTTCAGAAGACAAGTTCATGAGGTTTCATGCCG
GCCCTGAGGGAAAACCTAGCACCAAGGTAAGCCTTCAAGTCTGGAACAGC
CTCAATGGCCTTGATCAATGGTGTATCAACGGACTTCTGATCATCCTTCT
TCTCCTGAGGAAGCGACTTCTTCTCCTCTTTCTCTGACTCAAAGAACTCA
TTCTCTCCTTTCTTCTTCTTCCTCTCGACTTCCTTGGCAAAATACTTATC
ATCGAACTTATCCGCGTTCACTCCGGAGATATCAACTTTGGTAGAAGTTC
CAATCACGTAAGACTGGTTCACACGTCGTAAAGGAACACCATTGATCTTA
AATGGCCCAGAAACTAGAAGCAACCCAGATGGAAGCTGCTTCAGGAACAC
AACTCTCTTACCCTTGAACCTTCCAGCTAGTATAATCAGCACTGTC
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