CN182398

Overview
NameCN182398
Unique NameCN182398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.322e-53
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = -3
Query:  174 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 545
            +RK+APNAA K+DEK VNAARR+GADIETVRK +AG+NKAASS TSLNT+KLD+DTENL+HDRVP+ELKKAI+QAR +KKLTQSQLA LINEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:   16 IRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.241e-52
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = -3
Query:  174 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 545
            +RKK  NAA K+DEK VNAARR+GADIETVRK +AGTNKAASS TSLNT+ LD+DTENL H+RVP+ELKKAI+QAR DKKLTQSQLAQ+INEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:   16 IRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_HUMAN (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.937e-30
Identity = 72/134 (53.73%), Postives = 87/134 (64.93%), Query Frame = -3
Query:  144 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 545
            LRKK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   12 LRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_BOVIN (Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.937e-30
Identity = 72/134 (53.73%), Postives = 87/134 (64.93%), Query Frame = -3
Query:  144 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 545
            LRKK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   12 LRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.715e-30
Identity = 69/124 (55.65%), Postives = 86/124 (69.35%), Query Frame = -3
Query:  174 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 545
            LRKK P+AA  K ++ V AA+R G D+ET +K  AG NK      + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ K+ERA+G+KLR
Sbjct:   12 LRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLDRETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGKIERAIGLKLR 133          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_RAT (Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 71/134 (52.99%), Postives = 87/134 (64.93%), Query Frame = -3
Query:  144 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 545
            LRKK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   12 LRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_MOUSE (Endothelial differentiation-related factor 1 OS=Mus musculus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 71/134 (52.99%), Postives = 87/134 (64.93%), Query Frame = -3
Query:  144 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 545
            LRKK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   12 LRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.333e-29
Identity = 66/124 (53.23%), Postives = 84/124 (67.74%), Query Frame = -3
Query:  174 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 545
            LRKK P AA  K ++ + AA+R G ++ET +K  AG NK    + + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YE GKAIPN Q++ K+ER +G+KLR
Sbjct:   12 LRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLDRETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGKIERVIGLKLR 133          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: EDF1_DANRE (Endothelial differentiation-related factor 1 homolog OS=Danio rerio GN=edf1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 67/124 (54.03%), Postives = 84/124 (67.74%), Query Frame = -3
Query:  174 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 545
            LRKK  +AA  K ++ V AA+R G  +ET +K  AG NK      + NT KLD +TE L+H RVP E+ K I Q R +K LTQ  LA  INEKPQ+I EYE GKAIPN Q++ K+ERA+G+KLR
Sbjct:   12 LRKKG-SAAQSKSKQAVTAAQRKGEAVETSKKWAAGQNK--QHVVTKNTAKLDRETEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGKIERAIGLKLR 132          
BLAST of CN182398 vs. ExPASy Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.074e-27
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:  174 LRKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTS--LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 545
            L K    +   +D K VNAA R G  ++TV+K  AG+NK   S+    +NT+KL+E+TE  A DRV +E++  I +AR +KK++Q+ LA+ INE+ QV+QEYE+GKA+PNQ +L K+E+ LGVKLR
Sbjct:   18 LHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLR 143          
The following BLAST results are available for this feature:
BLAST of CN182398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MBF1B_ARATH4.322e-5383.87Multiprotein-bridging factor 1b OS=Arabidopsis tha... [more]
MBF1A_ARATH6.241e-5283.06Multiprotein-bridging factor 1a OS=Arabidopsis tha... [more]
EDF1_HUMAN3.937e-3053.73Endothelial differentiation-related factor 1 OS=Ho... [more]
EDF1_BOVIN3.937e-3053.73Endothelial differentiation-related factor 1 OS=Bo... [more]
EDF1_CHICK6.715e-3055.65Endothelial differentiation-related factor 1 homol... [more]
EDF1_RAT1.145e-2952.99Endothelial differentiation-related factor 1 OS=Ra... [more]
EDF1_MOUSE1.145e-2952.99Endothelial differentiation-related factor 1 OS=Mu... [more]
EDF1_XENLA3.333e-2953.23Endothelial differentiation-related factor 1 homol... [more]
EDF1_DANRE2.388e-2754.03Endothelial differentiation-related factor 1 homol... [more]
MBF1C_ARATH4.074e-2749.21Multiprotein-bridging factor 1c OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002G08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182398 ID=CN182398; Name=CN182398; organism=Citrus sinensis; type=EST; length=559bp
TAATAGATTCACAGTCATGACAAGAGTAACAGTCAAGGACACTAGTTATG
TGCCGAGCCATAACCATAGGAGAAAACATTCATATACAGCACCCATTTTG
AAGACTCAACAACAGGACACAACATCAAGTCCTGGTAGCAGTTTTTATTT
ATCCCTCCTCCTCACTTCTTTCCTCGAAGCTTCACACCAAGGGCCCTCTC
CAGCTTGGTAAGTATCTGCTGATTTGGAATGGCTTTTCCTGATTCATATT
CCTGAATCACCTGGGGCTTCTCATTGATCAACTGAGCAAGTTGAGACTGG
GTAAGTTTCTTATCATTTCGTGCCTGAACAATGGCTTTCTTGAGTTCACT
AGGCACTCGATCATGAGCAAGGTTCTCTGTATCTTCATCAAGCTTCCTGG
TGTTCAGAGAAGTGCTACTCGAGGCAGCCTTGTTTGTGCCAGCATGTGAT
TTTCTGACAGTCTCGATATCGGCACCGGCGCGGCGGGCAGCGTTAACGAC
CTTCTCGTCCTTCTTGGTGGCGGCGTTAGGGGCTTTCTTTCTTAATCACC
ACCGGCTCC
back to top