CN182396

Overview
NameCN182396
Unique NameCN182396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.299e-86
Identity = 151/193 (78.24%), Postives = 166/193 (86.01%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+ELVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.081e-84
Identity = 151/193 (78.24%), Postives = 162/193 (83.94%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +ELVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.171e-83
Identity = 150/193 (77.72%), Postives = 162/193 (83.94%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   ELVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.997e-83
Identity = 149/193 (77.20%), Postives = 163/193 (84.46%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            MKHNNVIP+ HF+KHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +ELVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.880e-76
Identity = 139/193 (72.02%), Postives = 154/193 (79.79%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            MKHNNVIPNGHFKK W+NYVKT FNQP                IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH G R
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.438e-65
Identity = 124/186 (66.67%), Postives = 140/186 (75.27%), Query Frame = 1
Query:   82 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARM 639
            NGHFKKHWQNYVKTWFNQP                I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GARM
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.153e-57
Identity = 108/193 (55.96%), Postives = 135/193 (69.95%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            ++ N+++PNGHF K WQ +VKTWFNQP                 FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +ELVK+T DMK    Y KLRIERVN R  G R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.543e-51
Identity = 104/190 (54.74%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            N +I N HF K WQ  V+TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.229e-50
Identity = 101/193 (52.33%), Postives = 129/193 (66.84%), Query Frame = 1
Query:   61 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP-TVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            K NN+IPN H+ K WQ +VKTWFNQP                +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  VE  +VT+D K FKA+  LR  R + R  G R
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195          
BLAST of CN182396 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.558e-48
Identity = 98/190 (51.58%), Postives = 122/190 (64.21%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 636
            N +I N HF K WQ  V+TWFNQP                I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI       +   +T++ K F A+  LR+ R N R FG R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
The following BLAST results are available for this feature:
BLAST of CN182396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH4.299e-8678.2460S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA3.081e-8478.2460S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA1.171e-8377.7260S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH1.997e-8377.2060S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH6.880e-7672.02Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC1.438e-6566.6760S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW7.153e-5755.9660S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE1.543e-5154.7460S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME2.229e-5052.3360S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU3.558e-4851.5860S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182396 ID=CN182396; Name=CN182396; organism=Citrus sinensis; type=EST; length=780bp
GAGGTCGAGACTGAGAGAAACGGACATAGTCGTCTGCATTTCGCTCTGTA
AACAGAAATGAAGCATAACAACGTAATTCCAAATGGGCACTTTAAGAAGC
ATTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCTCGCAAAAAT
CGACGACGAGTCGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTCGCCC
TACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCCAGACTTTGAAATACA
ACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAAGGCT
GCTGGAATTCCCAAGAAACTGGCTCCGACAATTGGTGTTTCAGTCGATCA
TCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCTAATGTTCAGAGGC
TCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGCTCGCAAG
TTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAACAGCAACTCAAGT
ACAAGGACCTTACATGCCCATTGCTCCTGAGAAGCCTACTGTCGAGCTTG
TTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCTTATGACAAACTCCGT
ATCGAGCGTGTGAACGAGCGCCATTTTGGTGCCAGGATGAAGAAGGCTGC
AGAGGCTGAAAAGGAAGAGAAGAAGTAAAAAAACTTGTTTAAGCAACACT
TTGAATGTGGGCCTGTTTTTGGCATTTTGTTATAGTGATTTCAATCTGTT
AGCTTTAGGCTTGAAATTGTTATTTTATTT
back to top