CN182388

Overview
NameCN182388
Unique NameCN182388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_RAT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment) OS=Rattus norvegicus GN=Ndufa9 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.016e-26
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            ++  G GGRSSVSG++ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+LMGDLGQ++ ++++ RD ++I+  +  +NVVINLIGRE+ET+
Sbjct:   33 VIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDIYDTMHLRLMGDLGQLIFLEWDARDKDSIRKAVQHSNVVINLIGREWETR 130          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.263e-26
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            ++  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV+VP R    D  HL+ MGDLGQI+ M +N RD ++I+  +  ++VVINL+GRE+ETQ
Sbjct:   40 VIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSSVVINLVGREWETQ 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA9 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.041e-26
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+
Sbjct:   40 LIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETK 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo pygmaeus GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.598e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+
Sbjct:   40 LIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETR 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo abelii GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.598e-26
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+
Sbjct:   40 LIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETR 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pan troglodytes GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.598e-26
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+
Sbjct:   40 LMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETK 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Homo sapiens GN=NDUFA9 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 8.598e-26
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+
Sbjct:   40 LMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETK 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.915e-25
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 2
Query:  194 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            ++  G GGRSSVSG++ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+LMGD GQ+  ++++ RD ++I+  +  +NVVINLIGRE+ET+
Sbjct:   40 VIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDPGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREWETR 137          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.793e-23
Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 2
Query:  167 SVATPGTGHLVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDP-RHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQKLRL 499
            S +T     L R   G R+  +G++ATVFG TGF GRY+VQ LA+ G QV+VP+R CED+  R LK++G+LGQI+P++F+ RD  +I+  ++ +N+VIN+ GR+YET+   L
Sbjct:   17 SFSTINENPLTRIHHGSRTQTTGLVATVFGATGFTGRYLVQLLARTGIQVVVPYR-CEDEGFRDLKVLGELGQIIPVRFDIRDSESIERAISHSNIVINMAGRDYETRNFSL 127          
BLAST of CN182388 vs. ExPASy Swiss-Prot
Match: NDUA9_NEUCR (NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-40 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.088e-20
Identity = 52/118 (44.07%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  134 NGADHRRFGSTSVATPGTGHLVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETQ 487
            N    +R   + V    TG  + +  GGRSS+ G  ATVFG TG LGRY+V +LA+ G  V++PFR  E + RHLK+ GDLG++V ++F+ R+  +I+ ++  ++VV NLIGR+Y T+
Sbjct:   18 NAFGFQRRAISDVTITRTGKPIIRNQGGRSSLGGHTATVFGATGQLGRYIVNRLARQGCTVVIPFRD-EYNKRHLKVTGDLGKVVMIEFDLRNTQSIEESVRHSDVVYNLIGRDYPTK 134          
The following BLAST results are available for this feature:
BLAST of CN182388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NDUA9_RAT1.016e-2657.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_BOVIN2.263e-2660.20NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_GORGO5.041e-2657.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PONPY8.598e-2657.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PONAB8.598e-2657.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PANTR8.598e-2657.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_HUMAN8.598e-2657.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_MOUSE1.915e-2556.12NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_DICDI1.793e-2348.21NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_NEUCR1.088e-2044.07NADH-ubiquinone oxidoreductase 40 kDa subunit, mit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182388 ID=CN182388; Name=CN182388; organism=Citrus sinensis; type=EST; length=520bp
GAGGGTCTCTTGCTGTGTTAGCTGAGAAGGAACAACGATGCAGGCCATCA
CAAGGCGATTAAGGCACCAATCTGTACAGCCCGCAACTTCCATTTCTTCT
CTTAAATCGGTTTACCCGCTCTCCGATTACTATAATGGAGCTGATCATCG
GAGATTTGGATCTACTTCGGTCGCCACTCCCGGTACCGGCCACCTTGTTC
GTAAGGGCACTGGTGGAAGATCTTCTGTTAGTGGCATTATAGCTACAGTG
TTTGGCACAACTGGGTTCCTTGGACGTTATGTTGTGCAACAACTTGCTAA
AATGGGATCTCAAGTGCTAGTTCCTTTCCGGGGCTGTGAGGATGATCCTC
GTCATCTCAAGTTGATGGGAGATTTGGGACAGATTGTACCGATGAAGTTT
AACCCAAGAGACGATAACACAATCAAGGCTACAATGGCAAAGGCTAATGT
TGTTATCAATCTTATTGGAAGAGAGTATGAGACCCAGAAACTACGGCTTT
GAGGATGTGAACCATTTTAT
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