CN182382

Overview
NameCN182382
Unique NameCN182382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.000e-85
Identity = 147/162 (90.74%), Postives = 153/162 (94.44%), Query Frame = -1
Query:  219 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 704
            RYFNPVGAHPSG IGEDPRGIPNNLMPFV QVAVGRRP LTVFG DY+T DGTGVRDYIHV+DLADGHIAAL KL+DPKIGCEVYNLGTGKGTSVLEMV AFE+ASGKKIPLV +GRRPGDAE+VYAST KAERELNWKAKYGIDEMCRDQWNWASKNPYGY
Sbjct:  181 RYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYTTSDGTGVRDYIHVVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPGDAEVVYASTNKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 342          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 302.753 bits (774), Expect = 1.204e-81
Identity = 143/163 (87.73%), Postives = 150/163 (92.02%), Query Frame = -1
Query:  216 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 704
            RYFNPVGAHPSG IGEDPRGIPNNLMPFV QVAVGRRP LTVFG DY+TKDGTGVRDYIHVIDLADGHIAAL KL+D KIGCEVYNLGTG GTSVLEMV AFEKASGKKIPLV +GRRPGDAE+VYAST +AE ELNWKAKYGI+EMCRD WNWAS NPYGY+
Sbjct:  181 RYFNPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGDAEVVYASTERAESELNWKAKYGIEEMCRDLWNWASNNPYGYD 343          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.807e-81
Identity = 142/162 (87.65%), Postives = 148/162 (91.36%), Query Frame = -1
Query:  219 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 704
            RYFNPVGAHPSG IGEDP G+PNNLMP+V QVAVGRRP LTVFGTDY TKDGTGVRDYIHV+DLADGHIAAL KLDD KI CEVYNLGTG GTSVLEMVAAFEKASGKKIPLV +GRRPGDAE+VYAST KAERELNWKAK GI+EMCRD WNWAS NPYGY
Sbjct:  180 RYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGDAEVVYASTEKAERELNWKAKNGIEEMCRDLWNWASNNPYGY 341          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 7.324e-71
Identity = 126/164 (76.83%), Postives = 140/164 (85.37%), Query Frame = -1
Query:  216 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKL-DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 704
            RYFNPVGAH SG IGEDP+GIPNNLMP++ QVAVGR PEL V+G DY T+DG+ VRDYIHV+DLADGHIAAL KL  DPKIGC  YNLGTG+GTSVLEMVAAFEKASGKKIP+    RR GDA  VYAST KAE+EL WKAKYG+DEMCRDQW WA+ NP+GY+
Sbjct:  185 RYFNPVGAHESGSIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTEDGSAVRDYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRSGDATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQ 348          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.200e-70
Identity = 123/164 (75.00%), Postives = 138/164 (84.15%), Query Frame = -1
Query:  216 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKL-DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 704
            RYFNPVGAH SG+IGEDPRG+PNNLMP++ QVAV R PEL ++G DY TKDGT +RDYIHV+DLADGHIAAL KL     IGC  YNLGTG+GTSVLEMVAAFEKASGKKIP+    RRPGDA  VYAST KAE+EL WKAKYG++EMCRDQW WAS NP+GY+
Sbjct:  188 RYFNPVGAHESGQIGEDPRGLPNNLMPYIQQVAVARLPELNIYGHDYPTKDGTAIRDYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPIKMCPRRPGDATAVYASTEKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQ 351          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.077e-69
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = -1
Query:  219 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKL-DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 704
            RYFNPVGAH SGK+GEDPRGIPNNLMP++ QVAVGR PEL V+G DY T+DG+ +RDYIHV+DLADGHIAAL KL     IGC  YNLGTG+G+SVLEMVAAFEKASGKKI L    RRPGDA  VYAST KAE+EL WKAKYG++EMCRDQWNWA  NP+GY
Sbjct:  184 RYFNPVGAHESGKLGEDPRGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGSSVLEMVAAFEKASGKKIALKLCPRRPGDATEVYASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGY 346          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.584e-57
Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = -1
Query:  216 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 704
            RYFNP GAHPSG+IGEDP GIPNNLMP+V QVAVG+  +L+VFG DY TKDGTGVRDYIHV+DLA+GH+ AL K+ +   G + YNLGTG G SVLEMV AFEK SGK++P   + RRPGD    +A   KA+REL W+AK G++EMC D W W S N  GY+
Sbjct:  175 RYFNPFGAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLN-STGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFADPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGYK 336          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 104/162 (64.20%), Postives = 120/162 (74.07%), Query Frame = -1
Query:  219 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 704
            RYFNP+GAH SG+IGEDP+GIPNNLMP+V+QVA+GRR  L VFG DY+T+DGTGVRDYIHV+DLA GHIAAL KL + + GC  YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G+
Sbjct:  183 RYFNPIGAHASGRIGEDPQGIPNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLKE-QCGCRTYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 343          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.341e-56
Identity = 104/162 (64.20%), Postives = 119/162 (73.46%), Query Frame = -1
Query:  219 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 704
            RYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR  L VFG DY T+DGTGVRDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A+ EL W A  G+D MC D W W  +NP G+
Sbjct:  184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344          
BLAST of CN182382 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.287e-56
Identity = 104/162 (64.20%), Postives = 118/162 (72.84%), Query Frame = -1
Query:  219 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 704
            RYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR  L VFG DY T+DGTGVRDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G+
Sbjct:  184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 344          
The following BLAST results are available for this feature:
BLAST of CN182382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE2_CYATE4.000e-8590.74UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE2_ARATH1.204e-8187.73UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE3_ARATH7.807e-8187.65UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE1_ARATH7.324e-7176.83UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE1_CYATE6.200e-7075.00UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE1_PEA3.077e-6975.46UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE_BACSU1.584e-5763.80UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_MOUSE7.861e-5764.20UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
GALE_HUMAN1.341e-5664.20UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]
GALE_PONAB2.287e-5664.20UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002F23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182382 ID=CN182382; Name=CN182382; organism=Citrus sinensis; type=EST; length=704bp
TTTTCACACACCAATGACACTGTTCCAATAAGGGAATGCCTAGATAAATC
TTCACAGTAGAAGATTGTATAGGGGACCTTCTATTGTTGTACAATACCAC
AAGGTTTTTCAGCTTAAAAATCTGATAATTAAGTGTACAGAATAGACACT
GTATATTGCGAGGAACTACTAATAAGGATGACAAATGACAGTTATTAGCT
AGTCGAGTTGGAAGATTCATAGCCATAAGGGTTCTTGCTGGCCCAATTCC
ATTGATCCCTACACATCTCGTCAATGCCATATTTTGCCTTCCAATTCAAT
TCACGTTCTGCCTTTCCTGTTGATGCATAAACAATTTCTGCGTCACCGGG
TCGCCTCCCAGACTTTACAAGAGGAATTTTCTTTCCAGAGGCTTTTTCAA
ATGCTGCAACCATCTCCAAAACTGATGTCCCTTTTCCCGTTCCCAAGTTG
TACACCTCACAACCTATCTTAGGATCATCAAGCTTATGCAATGCAGCAAT
GTGCCCATCAGCTAAGTCAATAACATGAATGTAATCACGGACCCCAGTAC
CATCCTTTGTTGAGTAATCAGTTCCAAATACTGTCAGCTCTGGACGCCTG
CCAACAGCAACTTGAGTGACGAAGGGCATGAGATTGTTTGGAATTCCACG
GGGATCCTCACCAATTTTGCCACTTGGATGTGCACCAACAGGATTGAAAT
ATCT
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