CN182381

Overview
NameCN182381
Unique NameCN182381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.362e-57
Identity = 113/139 (81.29%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   94 HNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            HNIT IL D P+YS FNSYL+QTKLADEINSR TITVLVL NGAMS L  KHPLSVIKSALSLLVLLDYYDPQKLH+ISKG           GNAPGNLGFVNITDL+GGKVGFGSAASGSKLDS+YTKSVKQIPYN+S
Sbjct:   26 HNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNIS 164          
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.193e-54
Identity = 106/139 (76.26%), Postives = 116/139 (83.45%), Query Frame = 1
Query:   94 HNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            HNIT IL D PEYS FN+YL+QTKLADEINSR TITVLVL NGAMS L  KHPLSV+K+ALSLLVLLDYYDP KLHQ+SKG           G+A GNLGFVN+TDL+GGKVGFGSAA GSKLDS+YTKSVKQIPYN+S
Sbjct:   26 HNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKHPLSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNIS 164          
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.058e-33
Identity = 74/140 (52.86%), Postives = 95/140 (67.86%), Query Frame = 1
Query:   94 HNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAK-HPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            HN+T +L + P +S F+ +LTQT LADEIN R+TITV  + N AMS LT+K + LS +K+ LSL VLLDY+  +KLHQI  G           G APG  GFVNITDL+GGKVGFG    G  L S + KS++++PYN+S
Sbjct:   25 HNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVGFG--PDGGDLSSFFVKSIEEVPYNIS 162          
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 70/140 (50.00%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   94 HNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAK-HPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            HNIT IL   P++S FN YL+ T LADEIN RQTITVL + N AMS + +  + L  I++ LSL VL+DY+  +KLHQI+ G           G+A G  G++NITD++GGKV FG     SKL + Y KSV + PYN+S
Sbjct:   27 HNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINITDIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNIS 166          
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA14_ARATH (Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana GN=FLA14 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.327e-27
Identity = 65/138 (47.10%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   97 NITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            NIT+IL +  ++S FN  L++T+LA  IN RQTITVLV+ NGA+S L+ + P SVIK  LSL ++LDYYD +KL  +SK            G A G  GF+N T ++ G V FGSA  GS LD+    +V  +P+N+S
Sbjct:   25 NITNILNEHDDFSNFNQLLSETQLASTINKRQTITVLVVSNGALSSLSGQ-PTSVIKKILSLHIVLDYYDQKKLKNLSKKTVLLTTLFQSSGLARGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNIS 161          
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA3_ARATH (Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana GN=FLA3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   97 NITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            NIT +L+ +PE+S     L +T+L   IN RQTITVL L N A+  ++ + P   +K+ L   V+LDY+D  KL  + +            G      GF+N T    GK+ FGS   G+   + Y  +V + PYN+S
Sbjct:   26 NITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGR-PEEEVKNILMNHVVLDYFDELKLKALKEKSTLLTTLYQSTGLGQQQNGFLNCTK-SNGKIYFGSGVKGAPQTAEYITTVFRNPYNLS 161          
BLAST of CN182381 vs. ExPASy Swiss-Prot
Match: FLA5_ARATH (Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana GN=FLA5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.960e-11
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   94 HNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVS 510
            +NIT   + + ++S       +TKL   I+  QTITVL + N A+S +T +  +  +++ L   V+LDYYD  KL  + +            G      GF+N++  + G+V FGS    S L++ Y  +V   PYN+S
Sbjct:   25 NNITLAFQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVE-LRNILMTHVILDYYDELKLQGMREKSIMLTTLYQTTGLGEQMNGFLNVSKSK-GRVYFGSEVKNSPLNAEYVSTVYHNPYNLS 161          
The following BLAST results are available for this feature:
BLAST of CN182381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FLA8_ARATH2.362e-5781.29Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA10_ARATH3.193e-5476.26Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA1_ARATH4.058e-3352.86Fasciclin-like arabinogalactan protein 1 OS=Arabid... [more]
FLA2_ARATH5.484e-3050.00Fasciclin-like arabinogalactan protein 2 OS=Arabid... [more]
FLA14_ARATH3.327e-2747.10Fasciclin-like arabinogalactan protein 14 OS=Arabi... [more]
FLA3_ARATH4.983e-1535.51Fasciclin-like arabinogalactan protein 3 OS=Arabid... [more]
FLA5_ARATH1.960e-1131.65Fasciclin-like arabinogalactan protein 5 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002F22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182381 ID=CN182381; Name=CN182381; organism=Citrus sinensis; type=EST; length=511bp
GAGGCAAATTCGAAATTGATAGCATCATCCACAATGAGCACCGTCTTTCT
CTTCCTCACTCTCTCTTTACTCGCAATTACCATTTCATCAGCCCACAACA
TCACCGACATTCTCAAAGACTTTCCAGAATACTCCCAGTTTAACAGCTAT
CTTACCCAAACAAAACTAGCCGATGAAATCAACAGTCGCCAAACAATCAC
CGTCCTTGTCCTCCCCAACGGAGCTATGTCTGATCTCACAGCCAAACACC
CCCTCTCCGTTATCAAAAGCGCACTTAGCCTCCTCGTTTTGCTTGACTAC
TACGACCCACAAAAGCTCCATCAAATTTCCAAAGGCACCACTCTCAGTAC
CACTCTTTACCAAACCACCGGAAATGCCCCTGGCAACTTAGGTTTCGTGA
ATATTACCGATCTCCAAGGTGGCAAAGTCGGCTTCGGCTCGGCTGCTTCT
GGCTCTAAGCTCGACTCCACTTACACCAAATCCGTTAAGCAGATTCCTTA
CAATGTCTCTG
back to top