CN182380

Overview
NameCN182380
Unique NameCN182380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = -3
Query:  436 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 579
            AIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   35 AIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = -3
Query:  436 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 579
            AIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   35 AIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = -3
Query:  436 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 579
            AIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   35 AIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = -3
Query:  436 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 579
            AIKRF VRNIVEQAA+RDVQEACV+DGY LPKLYAK+ +CVSCAIH+H
Sbjct:   35 AIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -3
Query:  439 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 579
            AIK+F++RNIVE AAVRD+ EA ++D Y LPKLYAK+ YCVSCAIHS
Sbjct:   35 AIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHS 81          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  439 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 579
            AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   35 AIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  439 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 579
            AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   35 AIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  439 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 579
            AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   35 AIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  439 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 579
            AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   35 AIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CN182380 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  439 AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 579
            AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   35 AIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
The following BLAST results are available for this feature:
BLAST of CN182380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS263_ARATH9.904e-1989.5840S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS262_ARATH9.904e-1989.5840S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH9.904e-1989.5840S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_ORYSJ1.868e-1783.3340S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_DROME4.306e-1472.3440S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_RAT5.624e-1472.3440S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG5.624e-1472.3440S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]
RS26_MOUSE5.624e-1472.3440S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA5.624e-1472.3440S ribosomal protein S26 OS=Macaca fascicularis G... [more]
RS26_HUMAN5.624e-1472.3440S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002F22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182380 ID=CN182380; Name=CN182380; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAGTCAAGGCAAGACATTCAANCTATCGGTAAA
ACTTAAGCAAAACAGAACAACAACANATTTTACTTCAATCACTCCATCAA
AATTCTCTAGGNGTTTTGATTCAAACTTTTGACAGTAAACAGTTCTCTGA
TGCATGACAACAAAACACAAAACTAACATAAAAGTTTGCAGTGCTCTAAT
TAAACAGACCCACATATCTGATACCACCACATAAAAATCTCAAAAGCCTC
AAAGGACCAGAAGCACTGACAGCAGAAAGCTTTCAAGCACGAGCAGCAGC
TGGAGCTCCAGCTGGACCACCAGCTCGTGGGCCTTGACCAAGAGCACCAC
CAGCCTTTGGGACATCATCCCTGCGCCTGAAGCGTTGCGGGGGCTCACGG
ATCCTCCTGTTAGTACGGGAACGAACTCTCACCACATGAGAGTGGATCGC
ACACGAGACGCAGTACTGCATCTTAGCATATAACTTAGGAAGAGTGTAAC
CGTCATAAACACACGCCTCCTGAACATCCCTAACAGCAGCTTGCTCAACA
ATGTTCCTCACCAAAAACCTCTTAATCGCCT
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