CN182378

Overview
NameCN182378
Unique NameCN182378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.907e-42
Identity = 75/137 (54.74%), Postives = 110/137 (80.29%), Query Frame = -1
Query:  273 LGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 683
            +G  L  +GYSLVT GT+NHLVLWDLRP G+TG+K+EK CD  +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  343 MGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.477e-41
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = -1
Query:  273 AVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 692
            A A+GN L  KGY LVT GT+NHL+LWDLRP  LTGNK EK  D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  317 AAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = -1
Query:  273 ALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 686
            AL   LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  337 ALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -1
Query:  273 ALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 686
            AL   LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  337 ALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.306e-32
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = -1
Query:  273 ALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 686
            AL + LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ        LK+F + L  ++ I++    L+ +VE FAS+F +PG
Sbjct:  331 ALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 70/144 (48.61%), Postives = 98/144 (68.06%), Query Frame = -1
Query:  273 ALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 686
            AL   L G GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  337 ALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = -1
Query:  273 ALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 686
            AL   L G GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF ++  F+HR + LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  337 ALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = -1
Query:  273 AVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 692
            A  L   +   GY+L TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  360 AKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 72/146 (49.32%), Postives = 101/146 (69.18%), Query Frame = -1
Query:  249 LTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 671
            L+ KGY LV+GGTENHLVL +L+  G+ G++VEK+ +L +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+   AV+L L+++ E  G  LKDF + L  +     +I  LK DVE+FA  F   GF+ + MKY
Sbjct:  371 LSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CN182378 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = -1
Query:  273 AVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 692
            A  L   L   GYSL TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  364 AKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
The following BLAST results are available for this feature:
BLAST of CN182378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI6.907e-4254.74Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI4.477e-4157.86Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_HUMAN1.181e-3350.35Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB2.631e-3350.35Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_MOUSE1.306e-3247.92Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_BOVIN2.909e-3248.61Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_SHEEP6.480e-3248.61Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_CAEEL6.480e-3247.22Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_PEA8.463e-3249.32Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR8.463e-3247.22Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002F21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182378 ID=CN182378; Name=CN182378; organism=Citrus sinensis; type=EST; length=692bp
TTTTACTAATTTGTTGTTTTATTTGTAGATGAACAATCATCATTTGACCA
AAGAGAAACGGATCTCACTTTCACAATATGGTGGGTACCAATTAAAAAAA
AAAAAAAGTTAAAACGAAAGCGTTTAAACCTAGGACAACAAAAGGCAAAG
ATGCATGCAATTTTTTTTCTTCTCTTTCTGTTTTTCAACACTAAAGAGTT
GCTAACAACACAGTAACAATAATGATGATACTTTGAGACCTAATCCTTGT
ACTTCATCTCGGACATTTTAAAGCCGGGCATGTCAAATGAGCTGGCGAAC
TTCTCAACATCAGCCTTGAGGGCCTCGATGTCCTTGTTGTTCACCAGACC
CTTGTTGAAGTCCTTCAAGAGCTTTCCATACTCCTTTTGAATTTCCAACG
TGAGGGTCACAGCGCGGTGAAGAAACTCTCCAATTTGCTCGAAGTCCTTC
TCCAACAAACCTCTGGAAGTCATGGCAGGAGTACCGATTCTTACTCCTCC
AGGGGCCAAGGCACTGCTGTCACCAAACACAGCATTCTTGTTCACAGTAA
TGTTGCAAAGGTCACAGAGCTTCTCAACCTTATTGCCAGTCAATCCAAGA
GGGCGTAGATCCCAGAGAACAAGGTGGTTCTCAGTTCCACCAGTGACAAG
GCTGTATCCCTTGCCCGTCAGGTAGTTCCCAAGTGCAACTGC
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