CN182375 | Citrus Genome Database

Overview


Name	CN182375
Unique Name	CN182375
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	465

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.744e-31
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVT 392
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGILLVYDVT
Sbjct:   51 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGILLVYDVT 98

HSP 2 Score: 48.521 bits (114), Expect = 5.744e-31
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            DESSFNNIRNWIRNIEQHASD
Sbjct:   99 DESSFNNIRNWIRNIEQHASD 119

HSP 3 Score: 41.5874 bits (96), Expect = 5.744e-31
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            LIKLLLIGDSGVGKSCLLLR
Sbjct:   15 LIKLLLIGDSGVGKSCLLLR 34

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.748e-31
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVT 392
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGILLVYDVT
Sbjct:   51 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGILLVYDVT 98

HSP 2 Score: 48.521 bits (114), Expect = 5.748e-31
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            DESSFNNIRNWIRNIEQHASD
Sbjct:   99 DESSFNNIRNWIRNIEQHASD 119

HSP 3 Score: 41.5874 bits (96), Expect = 5.748e-31
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            LIKLLLIGDSGVGKSCLLLR
Sbjct:   15 LIKLLLIGDSGVGKSCLLLR 34

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.889e-29
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVT 392
            +FKIRTIEL+GKRIKLQIWDTAGQERF   +  AYYRGAMGILLVYDVT
Sbjct:   51 DFKIRTIELEGKRIKLQIWDTAGQERF-RTITTAYYRGAMGILLVYDVT 98

HSP 2 Score: 43.5134 bits (101), Expect = 4.889e-29
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            DE SF NIRNWIRNIEQHA+D
Sbjct:   99 DEKSFGNIRNWIRNIEQHATD 119

HSP 3 Score: 41.5874 bits (96), Expect = 4.889e-29
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            LIKLLLIGDSGVGKSCLLLR
Sbjct:   15 LIKLLLIGDSGVGKSCLLLR 34

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.072e-28
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVT 392
            +FKIRTIEL+GKRIKLQIWDTAGQERF   +  AYYRGAMGILLVYDVT
Sbjct:   51 DFKIRTIELEGKRIKLQIWDTAGQERF-RTITTAYYRGAMGILLVYDVT 98

HSP 2 Score: 42.743 bits (99), Expect = 1.072e-28
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            DE SF +IRNWIRNIEQHASD
Sbjct:   99 DEKSFGSIRNWIRNIEQHASD 119

HSP 3 Score: 41.2022 bits (95), Expect = 1.072e-28
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L+KLLLIGDSGVGKSCLLLR
Sbjct:   15 LVKLLLIGDSGVGKSCLLLR 34

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.979e-27
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGILL+YDVT +  F
Sbjct:   45 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGILLLYDVTDKKSF 97

HSP 2 Score: 41.5874 bits (96), Expect = 6.979e-27
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            LIKLLLIGDSGVGKSCLLLR
Sbjct:    9 LIKLLLIGDSGVGKSCLLLR 28

HSP 3 Score: 35.039 bits (79), Expect = 6.979e-27
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            D+ SF+N+R W  N+EQHAS+
Sbjct:   93 DKKSFDNVRTWFSNVEQHASE 113

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.171e-26
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKI+ +++DGK +KLQIWDTAGQERF   +  AYYRGA GI+LVYD+T    F
Sbjct:   49 DFKIKKVDVDGKLVKLQIWDTAGQERF-RTITSAYYRGAQGIILVYDITDEASF 101

HSP 2 Score: 45.8246 bits (107), Expect = 1.171e-26
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            DE+SFNN+RNW+RNIEQHASD
Sbjct:   97 DEASFNNVRNWMRNIEQHASD 117

HSP 3 Score: 41.2022 bits (95), Expect = 1.171e-26
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            LIKLLL+GDSGVGKSCLLLR
Sbjct:   13 LIKLLLVGDSGVGKSCLLLR 32

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27

The following BLAST results are available for this feature:

BLAST of CN182375 vs. ExPASy Swiss-Prot

BLAST of CN182375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240


Match Name	E-value	Identity	Description
ARA3_ARATH	5.744e-31	85.71	Ras-related protein ARA-3 OS=Arabidopsis thaliana ...	[more]
RB1BV_BETVU	5.748e-31	85.71	Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB...	[more]
RAB8A_DICDI	4.889e-29	83.67	Ras-related protein Rab-8A OS=Dictyostelium discoi...	[more]
RAB8B_DICDI	1.072e-28	83.67	Ras-related protein Rab-8B OS=Dictyostelium discoi...	[more]
YPT2_SCHPO	6.979e-27	77.78	GTP-binding protein ypt2 OS=Schizosaccharomyces po...	[more]
YPTV2_VOLCA	1.171e-26	61.11	GTP-binding protein yptV2 OS=Volvox carteri GN=YPT...	[more]
RAB8A_RAT	1.173e-26	75.93	Ras-related protein Rab-8A OS=Rattus norvegicus GN...	[more]
RAB8A_PONAB	1.173e-26	75.93	Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8...	[more]
RAB8A_MOUSE	1.173e-26	75.93	Ras-related protein Rab-8A OS=Mus musculus GN=Rab8...	[more]
RAB8A_MACFA	1.173e-26	75.93	Ras-related protein Rab-8A OS=Macaca fascicularis ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0002F18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN182375 ID=CN182375; Name=CN182375; organism=Citrus sinensis; type=EST; length=465bp
GAGGCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGCGCTC
TCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTATGGCT
GCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGCTGCT
CCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCT
CTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGAACTT
CAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATAT
GGGATACTGCAGGTCAAGAGAGGTTTTCGAACAATTTACAACCCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCCGACGAGT
CATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCA
TCTGACAAATGTAAA