CN189018

Overview
NameCN189018
Unique NameCN189018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:455..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 4.163e-57
Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = -3
Query:  162 LDISVKPGTQVIY*KYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 584
            +DI+V  G Q+IY KYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:  113 IDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          

HSP 2 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = -3
Query:  165 SVKPGTQVIY*KYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 575
            S+KPGT           L  +    L+++   VV    T     +KPL DRV +K+ EAEE T GG+LL   ++ KP  G V+AVG G    + N+  +++  G  ++YSKYAG + + +D   ++ L+  +++ +L
Sbjct:   33 SLKPGT-----------LRQSQFRRLVVKAASVVAPKYTS----IKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGK-NKIDITVPTGAQIIYSKYAGTEVEFND-VKHLILKEDDIVGIL 152          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.033e-52
Identity = 95/141 (67.38%), Postives = 119/141 (84.40%), Query Frame = -3
Query:  162 LDISVKPGTQVIY*KYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 584
            L ++VK G +V+Y KY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS G V+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:  115 LPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          

HSP 2 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  165 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 467
            + T +   +KPL DRV IK    EE T  G+ L  A+++KP  G V+A+G G   + G++K P+++  G  V+YSKY G + +  DG++++ ++  +++ +L
Sbjct:   56 ITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSG--KKVGDKKLPVAVKTGAEVVYSKYTGTEIE-VDGSSHLIVKEDDIIGIL 154          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 452
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 452
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_PROM5 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9515) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 452
            +  +KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 452
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 452
            +  LKPL DRVF+KV+E+EE TAGG+LL +++KEKP IG V+AVG G  +++G+R  + +  G+ V+YSKYAG D K S G +Y+ L   +++A ++
Sbjct:    8 VSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLS-GDDYVLLSEKDILATVA 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 452
            +  +KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G  ++ L   +++A +S
Sbjct:    8 VTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIK-LGGEEFVLLSEKDILAAVS 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  171 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 452
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP +G V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILA 100          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.201e-21
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 452
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
The following BLAST results are available for this feature:
BLAST of CN189018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH4.163e-5776.6020 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL4.033e-5267.3820 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_THEVL1.265e-2147.9210 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB1.265e-2147.9210 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_PROM53.681e-2148.4510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_SYNPW4.808e-2148.9810 kDa chaperonin OS=Synechococcus sp. (strain WH7... [more]
CH10_SYNP26.279e-2148.4510 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_MICAN6.279e-2147.4210 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_CYAP76.279e-2147.8710 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_PROMS8.201e-2148.4510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189018 ID=CN189018; Name=CN189018; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTCCCTTTTTTTTTTTTTTTTCGATTGATCAAGCTGCAATTCT
TTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAACTC
AACCATAAAATTCAATTCACTAATACATATAAAGCCTCCCTCAAGTAAAC
ACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAAT
GTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGAAT
ACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTTCC
TCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGTTT
CTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAG
CCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCTTG
ATTTCATCTGTTTCAAGAATGCCAACTACATCATCCTCCCTCAATATGAG
ATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCTAATAGA
TGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTT
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