CN189012

Overview
NameCN189012
Unique NameCN189012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2577 contig Csv1_Contig2577:28..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189012 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 70/145 (48.28%), Postives = 92/145 (63.45%), Query Frame = -2 
Query:  257 NKVKFHVTDASLTEFNLTSNNNLKYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVP--LNSSN 679
            N VKF V DA LT F+L SNNNL+Y L+LN++IRN    IG+HYDR EA VYY ++RL +VP+  FY G KNT  L  +FEGQ ++L  G   + +  +   GV+ IDVKL +  R  +  + T   KP + C LK+P  L SSN
Sbjct:    5 NDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSN 149
The following BLAST results are available for this feature:
BLAST of CN189012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP24_ARATH5.392e-3148.28Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189012 ID=CN189012; Name=CN189012; organism=Citrus sinensis; type=EST; length=686bp
GAGGTATTTATTTACATAAAGGTACGAGGTGTAGCCTCAATGAAAAGGAA
GCCGTATAATAACAAGACCGTAAAATGTATACGCTAAAAAACAAAAGAAT
ATAATAATAAACTCAAAAAAGGAAAAAAAAAAAAAAAACACGAAGACTCG
ATCAAACAAGAGAATAAGATCATCATGATCATCAACAATGATGATCAATT
AACTAGAAATCAACATCGCACTTAGTAGTTTCAAAACGACGGCCAGCAAA
TCTGCCATTAGAAGAATTCAAAGGAACCTTCAGATCACACTCGATCGTGG
GCTTGAACTTTGGAGTCTTGATTTTGCCCAACTTGAACCTAACTTTCAAT
TTAAGCTTCACGTCGATGCTAAAAACTCCGGCATTATTCTCTTTATTATA
GTCTCTAAGTGCACCGCCAAGCAGAATCTGCTGCCCTTCGAAAACGGGGT
TCAAATAGCTGGTGTTTTTGTGTCCTTGATAAAATGGAGTGAGAGGAACA
GATGTTAACCTCTTGTCGTCGTAGTAAACCCTAGCTTCGATGCGGTCGTA
GTGTACGCCGATCTTTTTGTTAGGGTTTCTGATGGTGATGTTAAGGGCAA
GCTTGTATTTGAGGTTGTTGTTGGAAGTGAGGTTGAATTCAGTGAGAGAG
GCATCGGTGACGTGGAACTTGACCTTGTTGATGGGG
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