CX300713

Overview
NameCX300713
Unique NameCX300713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length307
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig249 contig Csv1_Contig249:691..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300713 vs. ExPASy Swiss-Prot
Match: Y1927_ARATH (LIM and UIM domain-containing At1g19270 OS=Arabidopsis thaliana GN=At1g19270 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.360e-12
Identity = 38/92 (41.30%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:   31 WKYSTGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKGKRSDFEKDLAKFFKHQIESDTSSAYGDG 306
            W    G+  L  DVEEGICQV+AH WL++E+                              KKG RS +E+ L +FFKHQIESD S  YGDG
Sbjct:  424 WMRLKGFRTLSQDVEEGICQVMAHKWLDAEL-----------AAGSTNSNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDG 504
The following BLAST results are available for this feature:
BLAST of CX300713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1927_ARATH1.360e-1241.30LIM and UIM domain-containing At1g19270 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC08001D11SK PhyRootSw1 Citrus sinensis cDNA clone C08001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300713 ID=CX300713; Name=CX300713; organism=Citrus sinensis; type=EST; length=307bp
CTCGTGCCGAATTCGGCACGAGGCTTATAATGGAAGTATTCGACAGGTTA
TCCCAATTTGAGGCCAGACGTAGAAGAAGGTATTTGCCAGGTATTGGCTC
ATATGTGGTTGGAATCTGAGATTTATTCTGGGTCAGGTAGTGATGTTGCT
TCATCCTCCTCATCCTCTGCCTCCTCTTCTTCATCCTCACCGTCATCCTC
ATCCACATCATCTAAGAAGGGTAAACGTTCTGACTTCGAGAAGGACCTTG
CTAAATTTTTTAAACACCAGATTGAGTCAGATACATCATCAGCCTATGGA
GATGGAT
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