CN182294

Overview
NameCN182294
Unique NameCN182294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.681e-28
Identity = 57/134 (42.54%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            A F +G FW +E+++G   GV+RTTVGYAGGS   P +R +GDH E ++++YDP VI+F++LL++FW +H+    +G    +  QY S+I  +  E+ ++A  SK  EQ +    I+TT+I     FYPAE  H
Sbjct:   42 ATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTEVLEIDYDPTVISFKELLDLFWNNHE----YGLTTPIKRQYASLILYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYH 171          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_RHORT (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25
Identity = 63/142 (44.37%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            +  A FA G FW  E  F  + GV  TTVGY GG    P +R +  GD  HAE+V+V+YDP  + + QLL+VFW +HD  QV  QGPD+G+QYRS IF +   +   A  S+ R EQ  + S  + T+I+    F+PAE  H
Sbjct:    1 MATATFAAGCFWGVEETFRKIPGVTGTTVGYTGGHFKEPTYRQVCAGDTGHAEAVRVDYDPDKVTYEQLLDVFWAAHDPTQVDRQGPDIGDQYRSAIFYHDAGQEAAAGASRARLEQSGALSRAIATRIEPAGPFWPAEEYH 142          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDH----AESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            A FA G FW  E +F  + GV +T VGY  G+  NP +R +       AE+V++EYDP  + + QLL +FW+ HD   +  QG DVG QYRS I+ +  E+   A  SKE+EQ+K K  I +T+I     FYPAE EH
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKDPI-STEILPAGVFYPAETEH 140          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_METAC (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina acetivorans GN=msrA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 63/153 (41.18%), Postives = 86/153 (56.21%), Query Frame = 1
Query:  103 STSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            ST I +  G  L+ A FA G FW  E  F  + GVV T VGY+GG    P +  +      HAE+V+V +DP+V++++ LL+VFW  HD      QGPDVG QYRS+IF +  E+   A  SKE  E+     + + T+I  +  FY AE  H
Sbjct:   17 STDIFENPGEGLEKATFAAGCFWGIEEAFRQVKGVVATAVGYSGGHFEKPTYEQVCTLDTGHAEAVRVIFDPKVVSYKNLLDVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNEEQKAAALASKEELEKAGVFKNPIVTEIVPVSEFYMAEDYH 169          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA1_ANASP (Peptide methionine sulfoxide reductase msrA 1 OS=Anabaena sp. (strain PCC 7120) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  133 PLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSI-VTTQIQQLVAFYPAEPEH 546
            P++ A F  G FW  EA F  + GVV T+VGY GG   NP + +    +  HAE VQ+EYDP+++++  LL VFW  HD   +  QGPD G QYRS+IF +  +++  A  SK + Q+  +  + + T+I+    +Y A  EH
Sbjct:   11 PMEKATFGAGCFWGVEAAFRKVKGVVSTSVGYMGGHFPNPCYLDVLSRITGHAEVVQIEYDPQLVSYEDLLAVFWDIHDPTTLNRQGPDKGEQYRSVIFFHNEQQAEAAQQSKAKVQVSGRFELDIVTEIKHKSEYYLATEEH 153          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 64/145 (44.14%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V+V YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+S  A  S+ER Q     +     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRVVYDPAVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQSTAAHASRERFQSAMADAGDERPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +      HAE+V+V YDP VI++ QLL+VFW +HD  Q   QG DVG QYRS I+    E+   A  S ER +   +++     +TT+I     FY AE EH
Sbjct:   43 MEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 62/145 (42.76%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL++FW +HD  Q   QG D G QYRS I+    E+S  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQSAAAHASRERFQSAMAAAGNHRPITTEITHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_METMA (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina mazei GN=msrA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  106 TSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            T I +  G  L+ A FA G FW  E  F  + GVV T VGY+GG    P +  +      HAE+V+V +DP +++++ LL+VFW  HD      QGPDVG QYRS+IF +  E+   A  SKE  E+  +  + V T+I  +  FY AE  H
Sbjct:   41 TEIFENPGEGLEKATFAAGCFWGIEEAFRQIKGVVATAVGYSGGHFKRPTYEQVCTLDTGHAEAVRVIFDPEIVSYKTLLDVFWKIHDPTTKDRQGPDVGKQYRSVIFYHSDEQKAAALASKEELEKSGAFKNPVVTEIVPVSEFYMAEDYH 192          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SERP5 (Peptide methionine sulfoxide reductase msrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            L+ A+FA+G FW  E +F    GV  T  GY+GG   NP +R +      H E V+V +DP++I+++QLL+VFW +HD  Q   QG DVG QYRS I+T   E+   A  S +R Q   + +     +TT++   + FY AE +H
Sbjct:   44 LEVAIFAMGCFWGVERLFWQQQGVYSTAAGYSGGYTPNPTYREVCSGQTGHTEVVRVVFDPKIISYKQLLQVFWENHDPAQGMRQGGDVGTQYRSAIYTLTPEQQTEAESSLQRFQQAMEQAGDKRAITTEVAPALPFYYAEDDH 188          
The following BLAST results are available for this feature:
BLAST of CN182294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
MSRA_DROME6.681e-2842.54Peptide methionine sulfoxide reductase OS=Drosophi... [more]
MSRA_RHORT2.376e-2544.37Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_DICDI1.540e-2444.20Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_METAC3.431e-2441.18Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA1_ANASP3.431e-2439.86Peptide methionine sulfoxide reductase msrA 1 OS=A... [more]
MSRA_SALAR4.482e-2444.14Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_ENTS85.853e-2442.76Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_SALSV7.645e-2442.76Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METMA7.645e-2440.79Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SERP51.304e-2340.00Peptide methionine sulfoxide reductase msrA OS=Ser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182294 ID=CN182294; Name=CN182294; organism=Citrus sinensis; type=EST; length=653bp
GAGGTCTCTATGGTTCTCTCAAAGAGATATCTATTTTTCTCCGTCCTCCA
TCTTCTTTTATTAACGGATACAGCATTGTGTATTCGGTTTCCGGATCGGG
TCTCTACCTCCATTAATGACGAATTGGGCCGGCCCCTAAAAGCGGCGGTT
TTCGCTCTTGGTAGCTTCTGGAGATCCGAAGCCGTATTCGGCTGCTTAAA
CGGAGTGGTAAGGACCACTGTCGGCTACGCTGGCGGATCCAAAACCAACC
CCGAATTCCGCAACCTTGGTGATCATGCCGAGTCCGTACAGGTTGAATAT
GATCCCAGGGTGATCAATTTTAGGCAACTTTTGGAAGTTTTTTGGACCAG
TCATGATTGTAGGCAAGTATTTGGGCAAGGTCCTGATGTGGGTAATCAAT
ACAGGTCCATTATTTTCACTAATGGAACAGAAGAATCCAGATTGGCCGCT
CATAGTAAAGAAAGGGAGCAGATGAAATCGAAGAGCAGCATAGTGACTAC
TCAAATTCAACAACTCGTAGCTTTTTATCCTGCAGAACCTGAACATCAGG
TTTTGTAATTTTTGCTCTCTCTTTCTCTCTCATACTCTGTTCAACAATTG
TGGAAGCATAGAGTAAGCTGTTGTGATTAGCAGGATTCCAGCAAATTTCT
TAT
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