CN182291

Overview
NameCN182291
Unique NameCN182291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 78/168 (46.43%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 VITTMPSTSVIFCLLALATI-HLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            + + MPS  ++  LL    I H S A N  +DYL AHN ARA VG+ P++W   +A Y+  +  +L  +CNL      +Y E +A  +   +TA + V+M +D K  YD +SNTCA  G  C  YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GNV GQ+PY
Sbjct:    5 LFSQMPSFFLVSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSH-GQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVKCNNGGYV--VSCNYDPPGNVIGQSPY 168          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR1_ARATH (Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 1
Query:   28 VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            ++F  L  A +  S A + P+DYL+ HN+AR +VG+GPM W  ++A Y+  +A++L+GNC L       Y E +AW + G ++    V M +  K  Y+  +NTC  NG  C  YTQVVWR SVRLGCAK RCNN GT+  + CNYDPRGN   + PY
Sbjct:   11 IVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIH-SGGPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVWRKSVRLGCAKVRCNNGGTI--ISCNYDPRGNYVNEKPY 161          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 73/154 (47.40%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   40 LLALATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            LL L   H   A N  +DYL AHN ARA VG+ P++W  ++A Y+  +A +L  +CNL      +Y E +AW +   +TA + V+M ++ K  Y  +SNTCA  G  C  YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GNV G++PY
Sbjct:   19 LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVQCNNGGYI--VSCNYDPPGNVIGKSPY 168          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 75/168 (44.64%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 VITTMPSTSVIFCLLALATI-HLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            + + +PS  ++  LL    I H   A N  +DYL AHN ARA VG+ P++W  ++A Y+  +A +L  +CNL      +Y E +A  +   +TA + V+M +D K  YD +SNTCA  G  C  YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GN  G++PY
Sbjct:    5 LFSQLPSFLLVSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVQCNNGGYV--VSCNYDPPGNYRGESPY 168          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 67/157 (42.68%), Postives = 97/157 (61.78%), Query Frame = 1
Query:   31 IFCLLALATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            + C++AL  +  S A N P+DY+ AHN AR++V +GP++W   +A ++ ++AQ   G+C L      +Y E +A+ +  ++T    V M +  +  Y+ N+NTCA  G  C  YTQVVWRNSVR+GCA+ RCNN     F+ CNY P GN  GQ PY
Sbjct:   14 LVCVVALVMVQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRYGENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCA-PGKVCGHYTQVVWRNSVRIGCARVRCNNGAW--FITCNYSPPGNYAGQRPY 167          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR06_SOLLC (Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   28 VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            ++ CL+ LA  H   A N P+DYL  HN+ARA VG+GPMSW   LA  +  +A    G+CNL     S   E +A    G  T    V++ +  +P Y+  +N C + G KC  YTQVVWRNSVRLGC + RCNN     F+ CNYDP GN  GQ PY
Sbjct:    9 LLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY 159          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.456e-32
Identity = 74/161 (45.96%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   22 TSVIFCLLALAT-IHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            T+++ C +  A  IH S A N P+DYL  HN AR  VG+GPM+W  +LA Y+  +A +  G+C +       Y E +A +   ++ A   VKM +D K  YD NSN+C   G  C  YTQVVWRNSVRLGCA+ R NN     F+ CNYDP GN  GQ P+
Sbjct:    5 TTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSH-GPYGENLA-AAFPQLNAAGAVKMWVDEKRFYDYNSNSCV--GGVCGHYTQVVWRNSVRLGCARVRSNNGWF--FITCNYDPPGNFIGQRPF 159          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR04_SOLLC (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   28 VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            ++ CL+ LA  H   A N P+DYL  HN+ARA VG+GPMSW   LA  +  +A    G+CNL     S   E +A    G  T    V++ +  +P Y+  +N C + G  C  YTQVVWRNSVRLGC + RCNN     F+ CNYDP GN  G+ PY
Sbjct:    9 LLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPDYNYATNQC-VGGKMCGHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWVGERPY 159          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR1_HORVU (Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 69/164 (42.07%), Postives = 97/164 (59.15%), Query Frame = 1
Query:   16 PSTSVIFCL-LALATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-KITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            P  +++  L +A A ++LS A N P+DY+  HN AR++VG+G +SW  KL  ++  +A +   +C L+      Y E I W + G    A++ V   +  K  YD  SNTCA  G  C  YTQVVWR S  +GCA+  CNNN  + F+ CNY+PRGN+ GQ PY
Sbjct:    4 PKLAILLALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQH-SGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCNNNRGV-FITCNYEPRGNIIGQKPY 164          
BLAST of CN182291 vs. ExPASy Swiss-Prot
Match: PR13_HORVU (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 71/161 (44.10%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   28 VIFCLLAL--ATIHLSSAHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-KITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 501
            VI   LA+  A ++LS A N P+DY+  HN ARA+VG+G +SW  KL  ++  +A +   +C L+      Y E I W + G    A++ V   +  K  YD  SNTCA  G  C  YTQVVWR S  +GCA+  CNNN  + F+ CNY+PRGN+ GQ PY
Sbjct:    7 VILLALAMSAAMVNLSQAQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCKLQH-SGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCNNNRGV-FITCNYEPRGNIVGQKPY 164          
The following BLAST results are available for this feature:
BLAST of CN182291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PR1B_TOBAC7.440e-3546.43Pathogenesis-related protein 1B OS=Nicotiana tabac... [more]
PR1_ARATH3.693e-3446.20Pathogenesis-related protein 1 OS=Arabidopsis thal... [more]
PR1C_TOBAC4.823e-3447.40Pathogenesis-related protein 1C OS=Nicotiana tabac... [more]
PR1A_TOBAC3.126e-3344.64Pathogenesis-related protein 1A OS=Nicotiana tabac... [more]
PR1_SAMNI9.095e-3342.68Pathogenesis-related protein PR-1 type OS=Sambucus... [more]
PR06_SOLLC2.026e-3246.20Pathogenesis-related leaf protein 6 OS=Solanum lyc... [more]
PRB1_TOBAC3.456e-3245.96Basic form of pathogenesis-related protein 1 OS=Ni... [more]
PR04_SOLLC3.821e-3144.94Pathogenesis-related leaf protein 4 OS=Solanum lyc... [more]
PR1_HORVU4.225e-3042.07Pathogenesis-related protein 1 OS=Hordeum vulgare ... [more]
PR13_HORVU1.229e-2944.10Pathogenesis-related protein PRB1-3 OS=Hordeum vul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002D16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182291 ID=CN182291; Name=CN182291; organism=Citrus sinensis; type=EST; length=654bp
GTAATCACCACAATGCCAAGCACTTCAGTAATTTTTTGTCTCTTAGCCCT
AGCGACAATCCATCTCTCCTCTGCCCACAATAAACCTGAAGACTACCTCA
AAGCTCACAACGAGGCTCGTGCTAGTGTTGGCATTGGCCCGATGTCATGG
GTCTACAAATTGGCGGATTATTCACATAAACATGCACAAAAACTAAAGGG
TAACTGCAATTTAAAGAAACCCCAAGTTAGCAAATACAGCGAGACAATTG
CATGGAGCAACCAGGGCAAGATTACCGCCACCGAGTTCGTGAAGATGTGT
ATGGATGGGAAGCCATTATACGACGACAACTCTAATACTTGTGCTCTTAA
TGGTACGAAATGCGCAATCTATACTCAAGTTGTGTGGCGCAATTCTGTGC
GTTTAGGTTGTGCTAAAGAGAGGTGCAATAACAATGGGACTCTCAACTTT
GTCATTTGCAACTACGATCCCCGAGGTAATGTTTTTGGTCAAAATCCTTA
CTAGTGGATCATAAAGAAACTTTCCTCTATATATGAGACCAGAGGGCTAT
GCATGAATAAGTCATGCCGTTGGCAGATATTCGAAAACAATAAAAATCAA
GCTATGTGTTCGCTTCCATTTATCGCAAGTAATAAAAAAAATAAATTGAA
CCCT
back to top