CN182290

Overview
NameCN182290
Unique NameCN182290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 69/143 (48.25%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N  +DYL AHN ARA VG+ P++W  ++A Y+  +A +L  +CNL      +Y E +AW +   +TA + V+M ++ K  Y  +SNTCA  G  C  YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GNV G++PY
Sbjct:   30 AQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVQCNNGGYI--VSCNYDPPGNVIGKSPY 168          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1_ARATH (Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.205e-32
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A + P+DYL+ HN+AR +VG+GPM W  ++A Y+  +A++L+GNC L       Y E +AW + G ++    V M +  K  Y+  +NTC  NG  C  YTQVVWR SVRLGCAK RCNN GT+  + CNYDPRGN   + PY
Sbjct:   26 AQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIH-SGGPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVWRKSVRLGCAKVRCNNGGTI--ISCNYDPRGNYVNEKPY 161          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.205e-32
Identity = 70/143 (48.95%), Postives = 92/143 (64.34%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N  +DYL AHN ARA VG+ P++W   +A Y+  +  +L  +CNL      +Y E +A  +   +TA + V+M +D K  YD +SNTCA  G  C  YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GNV GQ+PY
Sbjct:   30 AQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSH-GQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVKCNNGGYV--VSCNYDPPGNVIGQSPY 168          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.811e-32
Identity = 69/143 (48.25%), Postives = 93/143 (65.03%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N  +DYL AHN ARA VG+ P++W  ++A Y+  +A +L  +CNL      +Y E +A  +   +TA + V+M +D K  YD +SNTCA  G  C  YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GN  G++PY
Sbjct:   30 AQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVQCNNGGYV--VSCNYDPPGNYRGESPY 168          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.282e-30
Identity = 63/143 (44.06%), Postives = 89/143 (62.24%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DY+ AHN AR++V +GP++W   +A ++ ++AQ   G+C L      +Y E +A+ +  ++T    V M +  +  Y+ N+NTCA  G  C  YTQVVWRNSVR+GCA+ RCNN     F+ CNY P GN  GQ PY
Sbjct:   28 AQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRYGENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCA-PGKVCGHYTQVVWRNSVRIGCARVRCNNGAW--FITCNYSPPGNYAGQRPY 167          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.778e-29
Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DYL  HN AR  VG+GPM+W  +LA Y+  +A +  G+C +       Y E +A +   ++ A   VKM +D K  YD NSN+C   G  C  YTQVVWRNSVRLGCA+ R NN     F+ CNYDP GN  GQ P+
Sbjct:   23 AQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSH-GPYGENLA-AAFPQLNAAGAVKMWVDEKRFYDYNSNSCV--GGVCGHYTQVVWRNSVRLGCARVRSNNGWF--FITCNYDPPGNFIGQRPF 159          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR06_SOLLC (Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.778e-29
Identity = 68/143 (47.55%), Postives = 84/143 (58.74%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DYL  HN+ARA VG+GPMSW   LA  +  +A    G+CNL     S   E +A    G  T    V++ +  +P Y+  +N C + G KC  YTQVVWRNSVRLGC + RCNN     F+ CNYDP GN  GQ PY
Sbjct:   24 AQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY 159          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR04_SOLLC (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.240e-28
Identity = 66/143 (46.15%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DYL  HN+ARA VG+GPMSW   LA  +  +A    G+CNL     S   E +A    G  T    V++ +  +P Y+  +N C + G  C  YTQVVWRNSVRLGC + RCNN     F+ CNYDP GN  G+ PY
Sbjct:   24 AQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPDYNYATNQC-VGGKMCGHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWVGERPY 159          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR13_HORVU (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.167e-27
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-KITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DY+  HN ARA+VG+G +SW  KL  ++  +A +   +C L+      Y E I W + G    A++ V   +  K  YD  SNTCA  G  C  YTQVVWR S  +GCA+  CNNN  + F+ CNY+PRGN+ GQ PY
Sbjct:   24 AQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCKLQH-SGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCNNNRGV-FITCNYEPRGNIVGQKPY 164          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1_HORVU (Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.991e-27
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-KITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DY+  HN AR++VG+G +SW  KL  ++  +A +   +C L+      Y E I W + G    A++ V   +  K  YD  SNTCA  G  C  YTQVVWR S  +GCA+  CNNN  + F+ CNY+PRGN+ GQ PY
Sbjct:   24 AQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQH-SGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCNNNRGV-FITCNYEPRGNIIGQKPY 164          
The following BLAST results are available for this feature:
BLAST of CN182290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PR1C_TOBAC5.410e-3348.25Pathogenesis-related protein 1C OS=Nicotiana tabac... [more]
PR1_ARATH1.205e-3248.25Pathogenesis-related protein 1 OS=Arabidopsis thal... [more]
PR1B_TOBAC1.205e-3248.95Pathogenesis-related protein 1B OS=Nicotiana tabac... [more]
PR1A_TOBAC7.811e-3248.25Pathogenesis-related protein 1A OS=Nicotiana tabac... [more]
PR1_SAMNI3.282e-3044.06Pathogenesis-related protein PR-1 type OS=Sambucus... [more]
PRB1_TOBAC2.778e-2947.55Basic form of pathogenesis-related protein 1 OS=Ni... [more]
PR06_SOLLC2.778e-2947.55Pathogenesis-related leaf protein 6 OS=Solanum lyc... [more]
PR04_SOLLC5.240e-2846.15Pathogenesis-related leaf protein 4 OS=Solanum lyc... [more]
PR13_HORVU1.167e-2744.44Pathogenesis-related protein PRB1-3 OS=Hordeum vul... [more]
PR1_HORVU1.991e-2743.75Pathogenesis-related protein 1 OS=Hordeum vulgare ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182290 ID=CN182290; Name=CN182290; organism=Citrus sinensis; type=EST; length=583bp
GAGGGTTCAATTTATTTTTTTATTACTTGCGATAAATGGAAGCGAACACA
TAGCTTGATTTTATTGTTTTCGAATATCTGCCAACGGCATGACTTATTCA
TGCATAGCCCTCTGGTCTCATATATAGAGGAAAGTTTCTTTATGATCCAC
TAGTAAGGATTTTGACCAAAAACATTACCTCGGGGATCGTAGTTGCAAAT
GACAAAGTTGAGAGTCCCATTGTTATTGCACCTCTCTTTAGCACAACCTA
AACGCACAGAATTGCGCCACACAACTTGAGTATAGATTGCGCATTTCGTA
CCATTAAGAGCACAAGTATTAGAGTTGTCGTCGTATAATGGCTTCCCATC
CATACACATCTTCACGAACTCGGTGGCGGTAATCTTGCCCTGGTTGCTCC
ATGCAATTGTCTCGCTGTATTTGCTAACTTGGGGTTTCTTTAAATTGCAG
TTACCCTTTAGTTTTTGTGCATGTTTATGTGAATAATCCGCCAATTTGTA
GACCCATGACATCGGGCCAATGCCAACACTAGCACGAGCCTCGTTGTGAG
CTTTGAGGTAATCTTCAGGTTTATTGTGGGCAG
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