FC921843

Overview
NameFC921843
Unique NameFC921843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10524 contig Csv1_Contig10524:565..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH_CUCSA (Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.123e-41
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            PVSYVE AGDPY+DQMEECI LIMQ LK RGI N+HTLAYQSRVGPV+WLKPYTDEVLVELGQKG+KSLLA+PVSFVSEHIETLEEIDM
Sbjct:  312 PVSYVENAGDPYKDQMEECICLIMQELKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDM 400          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH_HORVU (Ferrochelatase-2, chloroplastic OS=Hordeum vulgare GN=HEMH PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.006e-39
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P++YV+ AGDPYRDQME+CI LIM+ LK RG  NDHTLAYQSRVGPV+WLKPYTDEVLVELGQKGVKSLLA+PVSFVSEHIETLEEIDM
Sbjct:  306 PLTYVKDAGDPYRDQMEDCIALIMEELKSRGTLNDHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAVPVSFVSEHIETLEEIDM 394          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH1_ORYSJ (Ferrochelatase-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0297000 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.441e-38
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P++YV  AGDPYRDQME+CI LIM  LK RGI N HTLAYQSRVGPV+WLKPYTDEVLVELGQ+GVKSLLA+PVSFVSEHIETLEEIDM
Sbjct:  304 PLTYVTDAGDPYRDQMEDCIALIMGELKSRGILNSHTLAYQSRVGPVQWLKPYTDEVLVELGQQGVKSLLAVPVSFVSEHIETLEEIDM 392          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH1_ARATH (Ferrochelatase-1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.103e-37
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            PVSYVE AGDPY+ QMEECI LIM+ LK RG+ NDH LAYQSRVGPV+WLKPYTDEVLV+LG+ GVKSLLA+PVSFVSEHIETLEEIDM
Sbjct:  287 PVSYVENAGDPYQKQMEECIDLIMEELKARGVLNDHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLAVPVSFVSEHIETLEEIDM 375          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH_ORYSI (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.480e-35
Identity = 66/89 (74.16%), Postives = 81/89 (91.01%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P++YVE+AGDPY+ +MEEC+ LIM+ L+ RGI N  TLAYQSRVGPV+WL+PYTDE ++ELGQKGVKSLLA+P+SFVSEHIETLEEID+
Sbjct:  311 PLAYVEEAGDPYKAEMEECVDLIMEELEKRGITNSCTLAYQSRVGPVEWLRPYTDETIIELGQKGVKSLLAVPISFVSEHIETLEEIDV 399          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH2_ORYSJ (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.480e-35
Identity = 66/89 (74.16%), Postives = 81/89 (91.01%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P++YVE+AGDPY+ +MEEC+ LIM+ L+ RGI N  TLAYQSRVGPV+WL+PYTDE ++ELGQKGVKSLLA+P+SFVSEHIETLEEID+
Sbjct:  311 PLAYVEEAGDPYKAEMEECVDLIMEELEKRGITNSCTLAYQSRVGPVEWLRPYTDETIIELGQKGVKSLLAVPISFVSEHIETLEEIDV 399          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH2_ARATH (Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.660e-32
Identity = 62/89 (69.66%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P++YVE+AGDPY+ +MEEC+ LIM+ L  R I N +TLAYQSRVGPV+WLKPYT+E + ELG+KGV++LLA+P+SFVSEHIETLEEID+
Sbjct:  298 PLAYVEEAGDPYKAEMEECVDLIMEELDKRKITNAYTLAYQSRVGPVEWLKPYTEEAITELGKKGVENLLAVPISFVSEHIETLEEIDV 386          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH_SYNP2 (Ferrochelatase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.331e-28
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P SYVE+AGDPY+ ++EEC  LIM+ L   G  ND+TLAYQSRVGPV+WL+PYT++ L+ LG+KGVK L+ IP+SFVSEHIETL+EID+
Sbjct:  199 PQSYVEEAGDPYQREIEECTKLIMEAL---GRPNDYTLAYQSRVGPVEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDI 284          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH_PROMA (Ferrochelatase OS=Prochlorococcus marinus GN=hemH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.331e-28
Identity = 56/90 (62.22%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRL-KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P SYVE+AGDPY+D++++C  LI+ ++ K  G +N +TL+YQSRVGP +WLKPYT+EVL ELG  GVK L+ +P+SFVSEHIETL+EID+
Sbjct:  199 PKSYVEEAGDPYKDEIQDCALLIIDKVEKSLGFSNSYTLSYQSRVGPEEWLKPYTEEVLEELGANGVKELIVVPISFVSEHIETLQEIDI 288          
BLAST of FC921843 vs. ExPASy Swiss-Prot
Match: HEMH_SYNR3 (Ferrochelatase OS=Synechococcus sp. (strain RCC307) GN=hemH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.857e-28
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 267
            P SYVE+AGDPY+ ++E C  LIM+ L   G +N  TLAYQSRVGPV+WL+PYT+E L ELG+KGVK L+ +P+SFVSEHIETLEEID+
Sbjct:  199 PKSYVEEAGDPYQKEIESCAELIMKTL---GRDNPWTLAYQSRVGPVEWLQPYTEEALEELGEKGVKELVVVPISFVSEHIETLEEIDI 284          
The following BLAST results are available for this feature:
BLAST of FC921843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
HEMH_CUCSA9.123e-4188.76Ferrochelatase-2, chloroplastic OS=Cucumis sativus... [more]
HEMH_HORVU5.006e-3985.39Ferrochelatase-2, chloroplastic OS=Hordeum vulgare... [more]
HEMH1_ORYSJ9.441e-3884.27Ferrochelatase-1, chloroplastic OS=Oryza sativa su... [more]
HEMH1_ARATH2.103e-3783.15Ferrochelatase-1, chloroplastic/mitochondrial OS=A... [more]
HEMH_ORYSI7.480e-3574.16Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ORYSJ7.480e-3574.16Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ARATH2.660e-3269.66Ferrochelatase-2, chloroplastic OS=Arabidopsis tha... [more]
HEMH_SYNP22.331e-2866.29Ferrochelatase OS=Synechococcus sp. (strain ATCC 2... [more]
HEMH_PROMA2.331e-2862.22Ferrochelatase OS=Prochlorococcus marinus GN=hemH ... [more]
HEMH_SYNR38.857e-2866.29Ferrochelatase OS=Synechococcus sp. (strain RCC307... [more]

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Properties
Property NameValue
Genbank descriptionC06053A08T7 RindPdigS Citrus sinensis cDNA clone C06053A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921843 ID=FC921843; Name=FC921843; organism=Citrus sinensis; type=EST; length=269bp
CCTGTCAGTTATGTTGAGAAAGCTGGTGATCCATACAGAGATCAGATGGA
AGAGTGTATCTACCTAATCATGCAGAGGTTGAAAGATAGAGGAATCAACA
ATGATCATACTTTGGCATACCAGAGTCGAGTTGGGCCTGTAAAATGGCTG
AAGCCTTACACTGATGAAGTTCTTGTGGAGCTTGGCCAGAAAGGTGTCAA
GAGTCTTCTAGCCATTCCAGTCAGTTTTGTGAGCGAGCACATTGAAACTC
TTGAAGAGATTGACATGGA
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