CX300710

Overview
NameCX300710
Unique NameCX300710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10524 contig Csv1_Contig10524:151..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH1_ORYSJ (Ferrochelatase-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0297000 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.721e-34
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSILAFVLFFSPRMINAFRNQL 298
            HIETLEEIDMEYKELALESGIENWGRVPAL CT SFI+DLADAV+EALPSA A+   K    + D + + Y  KMFFGSILAFVL  SPR+I+AFRN L
Sbjct:  383 HIETLEEIDMEYKELALESGIENWGRVPALGCTSSFISDLADAVVEALPSASALVTKKVDESDSDMDLMHYLSKMFFGSILAFVLLLSPRLISAFRNTL 481          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH_CUCSA (Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.694e-33
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSILAFVLFFSPRMINAFRN 292
            HIETLEEIDMEYK LALESGI+NWGRVPALNC  SFI+DLADAVIEALPSA A++   + +  DDH+P  YAIK+ FGS+LAF+L  SP+    FRN
Sbjct:  391 HIETLEEIDMEYKHLALESGIQNWGRVPALNCNSSFISDLADAVIEALPSATALAPHTSSTDADDHDPFLYAIKLLFGSVLAFILLLSPKAFMVFRN 487          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH1_ARATH (Ferrochelatase-1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.824e-33
Identity = 71/100 (71.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDD---HNPVRYAIKMFFGSILAFVLFFSPRMINAFRN 292
            HIETLEEIDMEY+ELALESG+ENWGRVPAL  TPSFITDLADAVIE+LPSA AMS P  +   +D    +   Y +KMFFGSILAFVL  SP+M +AFRN
Sbjct:  366 HIETLEEIDMEYRELALESGVENWGRVPALGLTPSFITDLADAVIESLPSAEAMSNPNAVVDSEDSESSDAFSYIVKMFFGSILAFVLLLSPKMFHAFRN 465          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH_HORVU (Ferrochelatase-2, chloroplastic OS=Hordeum vulgare GN=HEMH PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.404e-32
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSILAFVLFFSPRMINAFRNQL 298
            HIETLEEIDMEY+ELALESGIENWGRVPAL CT SFI+DLADAV+EALPSA AM+  K    + D + + Y  KMF GS+LAF L  SPR+++AFRN L
Sbjct:  385 HIETLEEIDMEYRELALESGIENWGRVPALGCTSSFISDLADAVVEALPSASAMATRKVKDTDSDMDMMHYLTKMFLGSVLAFFLLLSPRLVSAFRNTL 483          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH_ORYSI (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.154e-18
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMS 166
            HIETLEEID+EYKELALESGI++WGRVPAL C P+FITDLADAVIE+LP   AM+
Sbjct:  390 HIETLEEIDVEYKELALESGIKHWGRVPALGCEPTFITDLADAVIESLPYVGAMA 444          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH2_ORYSJ (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.154e-18
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMS 166
            HIETLEEID+EYKELALESGI++WGRVPAL C P+FITDLADAVIE+LP   AM+
Sbjct:  390 HIETLEEIDVEYKELALESGIKHWGRVPALGCEPTFITDLADAVIESLPYVGAMA 444          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH2_ARATH (Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.267e-17
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMS 166
            HIETLEEID+EYKELAL+SGI+NWGRVPAL   P FI+DLADAV+E+LP   AM+
Sbjct:  377 HIETLEEIDVEYKELALKSGIKNWGRVPALGTEPMFISDLADAVVESLPYVGAMA 431          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH_TRIEI (Ferrochelatase OS=Trichodesmium erythraeum (strain IMS101) GN=hemH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.046e-11
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 145
            HIETL+EID+EY+ELA E+GI N+ RVPALN  P FI DLAD V+EAL
Sbjct:  275 HIETLQEIDIEYRELAEEAGISNFYRVPALNTHPVFINDLADLVMEAL 322          
BLAST of CX300710 vs. ExPASy Swiss-Prot
Match: HEMH_CYAP4 (Ferrochelatase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.330e-11
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 HIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 145
            HIETL+EIDMEY+ELA E+GIE++ RVPALN  P FI DL+  V+EAL
Sbjct:  275 HIETLQEIDMEYRELAEEAGIEHFRRVPALNTHPLFIADLSQLVLEAL 322          
The following BLAST results are available for this feature:
BLAST of CX300710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HEMH1_ORYSJ9.721e-3472.73Ferrochelatase-1, chloroplastic OS=Oryza sativa su... [more]
HEMH_CUCSA3.694e-3369.07Ferrochelatase-2, chloroplastic OS=Cucumis sativus... [more]
HEMH1_ARATH4.824e-3371.00Ferrochelatase-1, chloroplastic/mitochondrial OS=A... [more]
HEMH_HORVU1.404e-3268.69Ferrochelatase-2, chloroplastic OS=Hordeum vulgare... [more]
HEMH_ORYSI1.154e-1880.00Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ORYSJ1.154e-1880.00Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ARATH8.267e-1774.55Ferrochelatase-2, chloroplastic OS=Arabidopsis tha... [more]
HEMH_TRIEI1.046e-1170.83Ferrochelatase OS=Trichodesmium erythraeum (strain... [more]
HEMH_CYAP42.330e-1168.75Ferrochelatase OS=Cyanothece sp. (strain PCC 7425 ... [more]
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Properties
Property NameValue
Genbank descriptionC08001D08SK PhyRootSw1 Citrus sinensis cDNA clone C08001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300710 ID=CX300710; Name=CX300710; organism=Citrus sinensis; type=EST; length=447bp
GCACATTGAAACTCTTGAAGAGATTGACATGGAGTACAAGGAATTGGCTC
TTGAATCCGGCATTGAAAATTGGGGACGTGTACCTGCTCTGAATTGCACC
CCTTCCTTCATCACAGATTTGGCAGATGCAGTAATAGAAGCTCTACCTTC
AGCATTAGCCATGTCTGCCCCTAAGAATATCTCTCAAGAGGATGACCATA
ACCCTGTGAGATATGCCATCAAAATGTTCTTTGGTTCGATCTTGGCATTT
GTTCTGTTTTTCTCGCCAAGAATGATTAATGCATTTAGGAATCAGCTCTT
TTGAAGGTGATTAAGAGGCAAGCTTACTTGAGTAATATTACATCTTGAGC
AAGGAGAGATAAAAATACTGATACCGTTTAAGAATTTTGGNCTTTCTCTA
TTTTATTCTTATACGGGAAACTAGCGATACAATGAGGGAATATTTAT
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