CN182284

Overview
NameCN182284
Unique NameCN182284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182284 vs. ExPASy Swiss-Prot
Match: VATG_CITLI (V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.779e-26
Identity = 63/80 (78.75%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  182 KMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 421
            KMARL               AQVEREFQRKLAES GDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQM LKHVTTVKN
Sbjct:   31 KMARLKQAKEEAEREIAEYRAQVEREFQRKLAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110          
BLAST of CN182284 vs. ExPASy Swiss-Prot
Match: VATG1_TOBAC (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = -3
Query:  182 KMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 421
            K ARL               A +E EFQRKL ++SGDSGANVKRLEQET+ KI HLK  AE++  DVVQMLL+HVTTVKN
Sbjct:   31 KQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110          
BLAST of CN182284 vs. ExPASy Swiss-Prot
Match: VAGT1_ARATH (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.171e-18
Identity = 49/80 (61.25%), Postives = 55/80 (68.75%), Query Frame = -3
Query:  182 KMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 421
            KMARL               AQ E++FQRKL E+SGDSGANVKRLEQET+ KI  LK  A +I  DVV+MLLKHVTTVKN
Sbjct:   31 KMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110          
BLAST of CN182284 vs. ExPASy Swiss-Prot
Match: VATG2_TOBAC (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = -3
Query:  182 VEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 355
            +E EFQR + ++SGDSGANVKRLEQET  KI HLK  AE I +DVVQMLL+ VTTVKN
Sbjct:   54 MEAEFQRNVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111          
BLAST of CN182284 vs. ExPASy Swiss-Prot
Match: VATG2_ARATH (V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = -3
Query:  182 KMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 421
            KM RL                  E+ FQRKL  +SGDSGANVKRLEQET+ KI  LK  A +I  DVV MLLK+VTTV N
Sbjct:   27 KMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106          
The following BLAST results are available for this feature:
BLAST of CN182284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VATG_CITLI4.779e-2678.75V-type proton ATPase subunit G OS=Citrus limon GN=... [more]
VATG1_TOBAC6.257e-1860.00V-type proton ATPase subunit G 1 OS=Nicotiana taba... [more]
VAGT1_ARATH8.171e-1861.25V-type proton ATPase subunit G1 OS=Arabidopsis tha... [more]
VATG2_TOBAC7.648e-1670.69V-type proton ATPase subunit G 2 OS=Nicotiana taba... [more]
VATG2_ARATH7.158e-1453.75V-type proton ATPase subunit G2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182284 ID=CN182284; Name=CN182284; organism=Citrus sinensis; type=EST; length=423bp
TTTATGGTTATTTATTCTAACAATGAGCAGAATTTGAAGTACAACGAACT
CATTTCCAACTTTGATAAATTACAATCCAAAATAAACCAAACGATGAAAC
AACCAATGCATGGATCCTAATTACAACTCACATGAAGTCTAGGATTCACA
ACGAACCAGGAAAAGATAACATCAGAGCTTAATTCTTCACAGTTGTAACA
TGCTTGAGGAGCATTTGGACAACATCATATTGAATTTTCTCAGCCCCAGC
CTTCAGATGATGAATTTTTACCTCTGTTTCTTGTTCAAGCCTCTTCACAT
TCGCACCTGAATCTCCACTACTCTCTGCAAGTTTCCTCTGGAACTCACGC
TCCACCTGAGCTCGATGTTCAGCAATCTCCCTTTCAGCCTCTTCTTTGGC
TTGCCTCAGTCTAGCCATTTTTG
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