CX300709

Overview
NameCX300709
Unique NameCX300709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2352 contig Csv1_Contig2352:345..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.752e-44
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 3
Query:    6 KPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 272
            KPEEITGIMNDFNEPGTLAPTGLY+GGTKYMVIQGEPG+VIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYLI+QGL
Sbjct:   43 KPEEITGIMNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.288e-44
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 3
Query:    6 KPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 269
            KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VERLGDYLIDQG
Sbjct:   43 KPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLIDQG 130          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.657e-44
Identity = 80/90 (88.89%), Postives = 89/90 (98.89%), Query Frame = 3
Query:    3 LKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 272
            LKPEE+TGI+NDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:   42 LKPEEVTGILNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF2_MALDO (Profilin-2 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.695e-44
Identity = 80/90 (88.89%), Postives = 88/90 (97.78%), Query Frame = 3
Query:    3 LKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 272
            LKPEE+TGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPG VIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNM+VERLGDYLI+QGL
Sbjct:   42 LKPEEVTGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGPGGVTVKKSTMALLIGIYDEPMTPGQCNMVVERLGDYLIEQGL 131          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.695e-44
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 3
Query:    6 KPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 272
            KPEEIT IMNDFNEPG+LAPTGLYL GTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:   43 KPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.136e-43
Identity = 82/89 (92.13%), Postives = 87/89 (97.75%), Query Frame = 3
Query:    3 LKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 269
            +KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ ALIIGIYDEPM PGQCNMIVERLGDYL++QG
Sbjct:   42 VKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMALIIGIYDEPMAPGQCNMIVERLGDYLLEQG 130          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.483e-43
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 3
Query:    6 KPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 269
            KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VER GDYLIDQG
Sbjct:   43 KPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERPGDYLIDQG 130          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.937e-43
Identity = 80/90 (88.89%), Postives = 88/90 (97.78%), Query Frame = 3
Query:    3 LKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 272
            LKPEE+TGI+ DF+EPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:   42 LKPEEVTGIVRDFDEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.361e-43
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 3
Query:    6 KPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 269
            K EEITGIM+DF+EPGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLIDQG
Sbjct:   43 KSEEITGIMSDFHEPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 130          
BLAST of CX300709 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.361e-43
Identity = 80/89 (89.89%), Postives = 87/89 (97.75%), Query Frame = 3
Query:    3 LKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 269
            +KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ +LIIGIYDEPMTPGQCNM+VER GDYL++QG
Sbjct:   42 VKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMSLIIGIYDEPMTPGQCNMLVERPGDYLLEQG 130          
The following BLAST results are available for this feature:
BLAST of CX300709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
PROF1_PHAVU1.752e-4492.13Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF2_SOYBN2.288e-4494.32Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]
PROF_PRUPE6.657e-4488.89Profilin OS=Prunus persica PE=1 SV=1[more]
PROF2_MALDO8.695e-4488.89Profilin-2 OS=Malus domestica PE=1 SV=1[more]
PROF1_RICCO8.695e-4493.26Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF2_AMBAR1.136e-4392.13Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=... [more]
PROF1_SOYBN1.483e-4393.18Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1[more]
PROF_FRAAN1.937e-4388.89Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF2_HEVBR7.361e-4392.05Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF1_AMBAR7.361e-4389.89Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC08001D07SK PhyRootSw1 Citrus sinensis cDNA clone C08001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300709 ID=CX300709; Name=CX300709; organism=Citrus sinensis; type=EST; length=396bp
AGTTAAAACCTGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCT
GGAACACTAGCACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGT
GATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTG
GTGTTACCATCAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGAT
GAGCCGATGACCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGA
TTATCTCATTGATCAGGGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGT
TTCATTTCTTGGCTTCCCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAA
TAATATTACAGTATTCAAAGTTATGGGAACTGTGTGTGGAAAGGAA
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