CN182282

Overview
NameCN182282
Unique NameCN182282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.390e-71
Identity = 131/140 (93.57%), Postives = 137/140 (97.86%), Query Frame = -2
Query:  263 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 682
            SDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D+TKSISKS+G+LIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET+RTLQALQYVQ+NPDEVCPAGWKPGDKSMKPDPK SKEYFAAI
Sbjct:  122 SDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYFAAI 261          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.045e-71
Identity = 128/140 (91.43%), Postives = 136/140 (97.14%), Query Frame = -2
Query:  263 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 682
            SDRY EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPL++DITKSISKS+G+LIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  132 SDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 271          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.301e-69
Identity = 125/140 (89.29%), Postives = 136/140 (97.14%), Query Frame = -2
Query:  263 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 682
            SDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS+G+LI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQY+QENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  127 SDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 266          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.628e-67
Identity = 124/140 (88.57%), Postives = 135/140 (96.43%), Query Frame = -2
Query:  263 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 682
            SDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSISKS+G+LIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTLQALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:   72 SDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.347e-66
Identity = 123/140 (87.86%), Postives = 135/140 (96.43%), Query Frame = -2
Query:  263 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 682
            SDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSISKS+G+LIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTL+ALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:   72 SDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLRALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.759e-66
Identity = 123/140 (87.86%), Postives = 133/140 (95.00%), Query Frame = -2
Query:  263 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 682
            SDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS+G+LI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQY   NPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  127 SDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYT-GNPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 265          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.466e-52
Identity = 97/139 (69.78%), Postives = 116/139 (83.45%), Query Frame = -2
Query:  266 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 682
            SD+Y  F +LNTE+LGVS DS +SHLAW+QTDR+SGGLGDL YPL++D+ K IS +Y +L  D G+ALRGLFIID +G+IQ+STINNL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGDK+M PDP  SK YFAA
Sbjct:   61 SDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVLNSD-GVALRGLFIIDPKGIIQYSTINNLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGDKTMNPDPIKSKNYFAA 198          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.369e-52
Identity = 95/139 (68.35%), Postives = 118/139 (84.89%), Query Frame = -2
Query:  266 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 682
            SD+Y++F +LNTEILGVS DS +SHLAW+QTDR+SGGLGDL+YPL++D+ K IS +Y +L    G+ALRGLFIID +G+IQ+ST+NNL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGD++M PDP  SK YFAA
Sbjct:   61 SDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVL-NSGGVALRGLFIIDPKGIIQYSTVNNLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGDRTMNPDPIKSKNYFAA 198          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.352e-49
Identity = 84/142 (59.15%), Postives = 119/142 (83.80%), Query Frame = -2
Query:  257 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI*E 682
            SDR++EF  L+TE++G+S DS FSHLAW+QT+RK GG+G++ YPL++D+ K IS++Y +L PD GIALRGLFIID+EG++Q++T+NNL+ GRSVDETLR L+A+++VQ +P+EVCP  W+ GDK+M PDP+ +K YF  + E
Sbjct:   58 SDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPDAGIALRGLFIIDREGILQYATVNNLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGDKTMIPDPEKAKTYFETVAE 199          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = -2
Query:  269 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 682
            SDR AEF KLN E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S  YG+L  D+GIA RGLF+ID +GV++  TIN+L +GRSVDE LR +QA QY  E+  EVCPAGW PG  ++KP+   SKEYF+
Sbjct:   60 SDRAAEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIAYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWTPGSDTIKPNVDDSKEYFS 196          
The following BLAST results are available for this feature:
BLAST of CN182282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
BAS1_ORYSJ1.390e-7193.572-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1B_ARATH4.045e-7191.432-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1A_ARATH1.301e-6989.292-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1_HORVU4.628e-6788.572-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_WHEAT1.347e-6687.862-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_SPIOL1.759e-6687.862-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
YCF42_PORYE2.466e-5269.78Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
YCF42_PORPU9.369e-5268.35Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
Y755_SYNY34.352e-4959.15Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX2_BOVIN7.950e-4360.14Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182282 ID=CN182282; Name=CN182282; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTGGCCACATATGATTCACAGTAACATTGATAACATG
AAGAGGACAATAACAAGAGATTTTGTTGTGTCTGCATTACAAAGGAAGTA
AAGAGGTGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCTGCTCC
GCAAAACTCAACAGTAAGTAGCAAAATCACATTACATGGAAAAACAAAAC
TCATCTACACCTCCCTAATAGACATAGATATGCATACGAGGTTCCAATGC
TAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCTG
GCTTCATGGATTTGTCCCCGGGCTTCCATCCTGCTGGGCAAACTTCATCT
GGGTTCTCCTGCACGTACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCGTC
AACACTCCTACCAATGGCAAGGTTGTTAATGGTTGAGTGCTGGATGACTC
CTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCAGGG
ATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCAGCAATTAG
TGGGTACTTCAAATCACCAAGACCACCTGACTTTCTGTCTGTTTGGACCC
ATGCCAAGTGTGAAAACACACTGTCAGTTGAGACACCCAATATCTCTGTG
TTTAGCTTCTCAAATTCAGCATATCGGTCACTG
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