CN182281

Overview
NameCN182281
Unique NameCN182281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182281 vs. ExPASy Swiss-Prot
Match: HTH_ARATH (Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.024e-32
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    2 GCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYHRVEKVVAFEPPM 334
            GCPLAATLSQN SVL+LERGG P+ N N++ L +F   L+D+S++S SQ F+S DGV N+RARVLGGGSC+NAGFY+RA   +V+  GWD +LV ESY  VE+ +  +P +
Sbjct:   74 GCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVHQPKL 184          
BLAST of CN182281 vs. ExPASy Swiss-Prot
Match: MDL3_PRUSE ((R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 56/112 (50.00%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    2 GCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERLVNESYHRVEKVVAFEP 328
            GCPLAATLS N SVL+LERG  P   PN+     F   L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA   +  +TG  WD  LVN++Y  VE  + FEP
Sbjct:   65 GCPLAATLSANYSVLVLERGSLPTEYPNLLISDGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNQTYEWVEDTIVFEP 176          
BLAST of CN182281 vs. ExPASy Swiss-Prot
Match: MDL2_PRUSE ((R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.822e-20
Identity = 54/112 (48.21%), Postives = 68/112 (60.71%), Query Frame = 2
Query:    2 GCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERLVNESYHRVEKVVAFEP 328
            GCPLAATLS N SVL+LERG  P   PN+     F   L  +    +P +RF+S DG+ N R RVLGG S +NAG Y RA   +  +TG  WD  LVN++Y  VE  + F+P
Sbjct:   66 GCPLAATLSANYSVLVLERGTLPTEYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNKTYDWVEDTIVFKP 177          
BLAST of CN182281 vs. ExPASy Swiss-Prot
Match: MDL1_PRUSE ((R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 2
Query:    2 GCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDERLVNESYHRVEKVVAFEP 328
            GCPLAATLS+   VL+LERG  P   PN+     F   L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  LVN++Y  VE  + F+P
Sbjct:   65 GCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWDMDLVNKTYEWVEDTIVFKP 176          
BLAST of CN182281 vs. ExPASy Swiss-Prot
Match: MDL4_PRUSE ((R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 GCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERLVNESYHRVEKVVAFEP 328
            GCPLAATLS N SVL+LERG      PN   +  F   L       +P +RF+SEDG+ N R+R+LGG + +NAG Y RA   +   +G  WD  LVNE+Y  VE  + ++P
Sbjct:   66 GCPLAATLSANYSVLVLERGTIATEYPNTLTVDGFAYNLQQQDDGKTPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVEDAIVYKP 177          
BLAST of CN182281 vs. ExPASy Swiss-Prot
Match: MDL1_PRUDU ((R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 GCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERLVNESYHRVEKVVAFEP 328
            GCPLAATLS+   VLLLERG      PN      F   L       +P +RF+SEDG+ N RAR+LGG + +NAG Y RA   +  +TG  WD  LVN++Y  VE  +  +P
Sbjct:   65 GCPLAATLSEKYKVLLLERGTIATEYPNTLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYSQTGIEWDLDLVNKTYEWVEDAIVVKP 176          
The following BLAST results are available for this feature:
BLAST of CN182281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HTH_ARATH2.024e-3258.56Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=... [more]
MDL3_PRUSE2.743e-2150.00(R)-mandelonitrile lyase 3 OS=Prunus serotina GN=M... [more]
MDL2_PRUSE8.822e-2048.21(R)-mandelonitrile lyase 2 OS=Prunus serotina GN=M... [more]
MDL1_PRUSE1.965e-1946.43(R)-mandelonitrile lyase 1 OS=Prunus serotina GN=M... [more]
MDL4_PRUSE3.353e-1945.54(R)-mandelonitrile lyase 4 OS=Prunus serotina GN=M... [more]
MDL1_PRUDU2.838e-1845.54(R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182281 ID=CN182281; Name=CN182281; organism=Citrus sinensis; type=EST; length=336bp
AGGCTGCCCGTTAGCCGCCACGCTCTCGCAAAACGCCTCCGTGTTGCTAC
TTGAACGCGGTGGCTCGCCTTACGGAAACCCCAACATCACCAACTTGGGT
TCTTTTGGCGCTGCACTCTCTGATCTCTCCTCAACCTCTCCCTCGCAGCG
CTTCATCTCCGAAGATGGCGTCATCAATTCCCGTGCCCGCGTTTTGGGAG
GTGGCAGTTGCCTCAATGCCGGCTTCTACACACGCGCTGCGCCTTATTAT
GTCAGAGAAACGGGGTGGGATGAACGTTTGGTGAATGAATCGTACCATCG
GGTGGAGAAGGTGGTGGCATTCGAGCCGCCGATGCG
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