CN182280

Overview
NameCN182280
Unique NameCN182280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.361e-33
Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = -1
Query:  179 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPLSN 469
            TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL AGPFSGGSMNPARSFGPAVASG++ + WIYWV               V+M  +HAP+++
Sbjct:  149 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVAS 245          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.390e-33
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = -1
Query:  173 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPLSNDY 469
            TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV             G+VF+ S       DY
Sbjct:  149 TFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDY 247          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.390e-33
Identity = 71/98 (72.45%), Postives = 78/98 (79.59%), Query Frame = -1
Query:  179 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFM-HSEHAPLSN 469
            TF LVYTVYATAADPKKGSLGTIAP+AIG IVGANILAAGPFSGGSMNPARSFGPAVA+G+F  +W+YWV             GNVFM  SEH PL++
Sbjct:  150 TFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLAS 247          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.489e-33
Identity = 74/101 (73.27%), Postives = 78/101 (77.23%), Query Frame = -1
Query:  173 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPL--SNDY 469
            TF LVYTVYATAADPKKGSLG IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG+F  NWIYW              G+VF+ + HAPL  S DY
Sbjct:  150 TFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFI-TAHAPLPTSEDY 249          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.339e-32
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TF LVYTVYATAADPKKGSLGTIAP+AIGFIVGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV
Sbjct:  149 TFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWV 218          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 8.280e-32
Identity = 72/101 (71.29%), Postives = 76/101 (75.25%), Query Frame = -1
Query:  173 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPL--SNDY 469
            TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW              G+VF+   H PL  S DY
Sbjct:  150 TFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.280e-32
Identity = 72/101 (71.29%), Postives = 76/101 (75.25%), Query Frame = -1
Query:  173 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPL--SNDY 469
            TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW              G+VF+   H PL  S DY
Sbjct:  150 TFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.081e-31
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+G+F  NW+YWV
Sbjct:  149 TFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWV 218          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.146e-31
Identity = 71/100 (71.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  173 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHS-EHAPLSNDY 469
            TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV SG+F   WIYWV             G+VF+ S   AP +  Y
Sbjct:  150 TFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAPAPTTESY 249          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.367e-31
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+ +F  NW+YWV
Sbjct:  150 TFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWV 219          
The following BLAST results are available for this feature:
BLAST of CN182280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TIP22_ORYSJ3.361e-3371.13Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP21_ORYSJ4.390e-3371.72Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP21_ARATH4.390e-3372.45Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP_ANTMA7.489e-3373.27Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP23_MAIZE6.339e-3291.43Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP2_TOBAC8.280e-3271.29Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC8.280e-3271.29Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP21_MAIZE1.081e-3191.43Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP22_ARATH3.146e-3171.00Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP22_MAIZE5.367e-3190.00Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182280 ID=CN182280; Name=CN182280; organism=Citrus sinensis; type=EST; length=526bp
TTTACAACCTCCAAAACAAATGATTTAAAAAGAAGGATACCAAGAAACTA
AAGAAGAAAAGAAGAAAGAGCCAAAGCTGCTTTTCCTTCTTTTATTACAA
AAAAGAAAGAGCCAGAAGCAGGTGGTCAAATGATTTAACTAAACTTTTAA
ACAAAGTTTAACTAATTAATTAATAGTCATTAGATAGGGGTGCATGTTCA
GAGTGCATGAACACATTGCCATAGATGAGCCCCGCAAGGCCGCCGCCAAT
GAGAGGGCCAACCCAGTAGATCCAGTTGTCCTGGAAGTTGCCGCTGGCAA
CGGCAGGCCCGAAGGAACGGGCCGGGTTCATGGATCCACCGGAGAATGGG
CCGGCGGCCAGGATGTTGGCACCGACAATGAAACCAATGGCAATGGGTGC
AATGGTGCCCAATGATCCCTTCTTCGGGTCAGCTGCCGTGGCATAGACCG
TGTAGACCAAACCAAATGTGATGATGATCTCCATCACAACTCCTTCAATG
GCTCCAACTCCAGCAGCAACATTGTG
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