CN182273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 9.666e-51 Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 3 Query: 6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 AKGL +V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATK K G + PF KAMWREA+EC Sbjct: 245 AKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFD-ETPFVKAMWREAREC 362
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.543e-48 Identity = 90/119 (75.63%), Postives = 97/119 (81.51%), Query Frame = 3 Query: 6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 A+G+ + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TK K G + G P+ KAMWREAKEC Sbjct: 246 AQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGD-YYQFDGTPWVKAMWREAKEC 363
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.706e-47 Identity = 89/119 (74.79%), Postives = 98/119 (82.35%), Query Frame = 3 Query: 6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 A+G+ + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATK K G + G P+Y AM+REAKEC Sbjct: 245 AQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGD-YYQFDGTPWYVAMYREAKEC 362
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.228e-47 Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 3 Query: 9 KGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 KGLV++ C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT K G + PFYKA+WREA+EC Sbjct: 250 KGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGE-YYQFDDTPFYKALWREAREC 366
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34 Identity = 70/119 (58.82%), Postives = 80/119 (67.23%), Query Frame = 3 Query: 6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 AKG +V CIYG P+L V F +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA G F P KAMWREAKEC Sbjct: 238 AKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGD-FYKIDRTPILKAMWREAKEC 355
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25 Identity = 60/117 (51.28%), Postives = 71/117 (60.68%), Query Frame = 3 Query: 15 LVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 L+ V Y P L VN +LVLIT LQHT P LPHY W++ RGAL TVDR +G L+ +FH I THVAHHLFS MP YHA EAT K G ++ P A+WR +EC Sbjct: 271 LLTVTKYYIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPS-PIVVAVWRSFREC 386
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25 Identity = 57/107 (53.27%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 45 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362 P L VN +LVLIT LQHT P LPHY W++ RGAL TVDR +G L+ +FH I THVAHHLFS MP YHA EAT K G ++ P A+WR +EC Sbjct: 281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPS-PIVVAVWRSFREC 386
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19 Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIF 305 A G + +F IYG P L+ +L +T L H LP Y EW + RG L TVDRDYG+ N + H+I THV HHLF +PHYH EATK K G+ + Sbjct: 229 AFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYY 329
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19 Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 3 Query: 12 GLVYVFCIYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIF---ISSMGLPFY 332 G +++ +YG P L+ +L +T L H TH LP Y EW + RG L TVDRDYG +N V H+I THV HHLF +PHYH +EATK K+ G+ + S LPF+ Sbjct: 231 GPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFH 341
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.839e-18 Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 3 Query: 12 GLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIF----ISSMGLPFY 332 G + + +YG P ++ +L L+T L H LP Y EW + RG L T+DRDYG +N + H+I THV HHLF +PHYH +EAT+ K FG+ + S+ LPF+ Sbjct: 305 GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFH 416 The following BLAST results are available for this feature:
BLAST of CN182273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182273 ID=CN182273; Name=CN182273; organism=Citrus sinensis; type=EST; length=391bpback to top |