CN182273

Overview
NameCN182273
Unique NameCN182273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.666e-51
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 3
Query:    6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            AKGL +V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATK  K   G  +      PF KAMWREA+EC
Sbjct:  245 AKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFD-ETPFVKAMWREAREC 362          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.543e-48
Identity = 90/119 (75.63%), Postives = 97/119 (81.51%), Query Frame = 3
Query:    6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            A+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TK  K   G  +    G P+ KAMWREAKEC
Sbjct:  246 AQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGD-YYQFDGTPWVKAMWREAKEC 363          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.706e-47
Identity = 89/119 (74.79%), Postives = 98/119 (82.35%), Query Frame = 3
Query:    6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            A+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATK  K   G  +    G P+Y AM+REAKEC
Sbjct:  245 AQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGD-YYQFDGTPWYVAMYREAKEC 362          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.228e-47
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 3
Query:    9 KGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            KGLV++ C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT   K   G  +      PFYKA+WREA+EC
Sbjct:  250 KGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGE-YYQFDDTPFYKALWREAREC 366          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34
Identity = 70/119 (58.82%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            AKG  +V CIYG P+L V  F  +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA        G  F      P  KAMWREAKEC
Sbjct:  238 AKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGD-FYKIDRTPILKAMWREAKEC 355          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 60/117 (51.28%), Postives = 71/117 (60.68%), Query Frame = 3
Query:   15 LVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT   K   G  ++     P   A+WR  +EC
Sbjct:  271 LLTVTKYYIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPS-PIVVAVWRSFREC 386          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 57/107 (53.27%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   45 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIFISSMGLPFYKAMWREAKEC 362
            P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT   K   G  ++     P   A+WR  +EC
Sbjct:  281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPS-PIVVAVWRSFREC 386          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 3
Query:    6 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIF 305
            A G + +F IYG P L+   +L  +T L H      LP Y   EW + RG L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATK  K   G+ +
Sbjct:  229 AFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYY 329          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 3
Query:   12 GLVYVFCIYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIF---ISSMGLPFY 332
            G +++  +YG P L+   +L  +T L H   TH  LP Y   EW + RG L TVDRDYG +N V H+I  THV HHLF  +PHYH +EATK  K+  G+ +     S  LPF+
Sbjct:  231 GPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFH 341          
BLAST of CN182273 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.839e-18
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 3
Query:   12 GLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKGNKANFGRIF----ISSMGLPFY 332
            G + +  +YG P ++   +L L+T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+  K  FG+ +     S+  LPF+
Sbjct:  305 GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFH 416          
The following BLAST results are available for this feature:
BLAST of CN182273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN9.666e-5178.99Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU1.543e-4875.63Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.706e-4774.79Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN2.228e-4772.88Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL2.163e-3458.82Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP6.976e-2551.28Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS9.111e-2553.27Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC2.567e-1946.08Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU3.353e-1945.13Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN2.839e-1841.59Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182273 ID=CN182273; Name=CN182273; organism=Citrus sinensis; type=EST; length=391bp
GAGGAGCAAAAGGACTTGTGTACGTGTTCTGCATCTATGGAGGACCTTTG
CTGGTAGTGAACGGATTTCTCGTTTTGATCACATTGTTGCAGCACACTCA
CCCTTCACTGCCACATTACCATTCTTCAGAATGGGACTGGTTCCGAGGAG
CCCTAGCAACTGTTGATAGAGACTATGGGATCTTGAACAAGGTCTTCCAT
AACATTACTGATACTCATGTAGCTCACCATTTGTTTTCAACAATGCCACA
TTATCATGCAATGGAGGCTACGAAAGGCAATAAAGCCAATTTTGGGAGAA
TATTTATCAGTTCAATGGGACTTCCATTTTATAAGGCAATGTGGAGGGAA
GCAAAGGAGTGTTCTTTACGTTTGAACCGGACGAAGGTGAC
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