CN182164

Overview
NameCN182164
Unique NameCN182164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 3.308e-122
Identity = 213/242 (88.02%), Postives = 221/242 (91.32%), Query Frame = -2
Query:  129 SRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 854
            +RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY           GKDEKSMK+ KLKE+KNGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct:   32 TRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 9.961e-119
Identity = 210/243 (86.42%), Postives = 220/243 (90.53%), Query Frame = -2
Query:  129 SRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 854
            SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAY           GKDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct:   35 SRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.126e-36
Identity = 94/239 (39.33%), Postives = 121/239 (50.63%), Query Frame = -2
Query:  165 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 830
            R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:   52 RSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWYT------AGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.078e-36
Identity = 93/239 (38.91%), Postives = 123/239 (51.46%), Query Frame = -2
Query:  165 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 830
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.990e-34
Identity = 92/228 (40.35%), Postives = 119/228 (52.19%), Query Frame = -2
Query:  147 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 827
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  Y              E      K KE+ NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.873e-33
Identity = 88/224 (39.29%), Postives = 118/224 (52.68%), Query Frame = -2
Query:  138 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 806
            K  A +  W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ NGRLAMLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct:   48 KVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.624e-30
Identity = 93/229 (40.61%), Postives = 124/229 (54.15%), Query Frame = -2
Query:  153 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 800
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.624e-30
Identity = 93/229 (40.61%), Postives = 124/229 (54.15%), Query Frame = -2
Query:  153 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 800
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 93/229 (40.61%), Postives = 124/229 (54.15%), Query Frame = -2
Query:  153 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 800
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253          
BLAST of CN182164 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.476e-29
Identity = 93/229 (40.61%), Postives = 124/229 (54.15%), Query Frame = -2
Query:  153 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 800
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
The following BLAST results are available for this feature:
BLAST of CN182164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB13_SOLLC3.308e-12288.02Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA9.961e-11986.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY2.126e-3639.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC8.078e-3638.91Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH1.990e-3440.35Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.873e-3339.29Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB23_ORYSJ6.624e-3040.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.624e-3040.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP1.130e-2940.61Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC1.476e-2940.61Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182164 ID=CN182164; Name=CN182164; organism=Citrus sinensis; type=EST; length=858bp
CCCTTCGCCAGTTAATTCACTTTTCACATAGATAATTTTACAATGGGGAA
AGTAGAATAGAACAGAGTGGGGGATGACAAGGCTTGGAATATATAATTCC
AAGCAATGAACAAGAAATTTCTCTCTCAGTGAAACTTGAGGCTAGTCAAA
ACATTGTTGTTGACAGGATCAGCCAAGTGATCCAATAGGTTCTGGTAAGG
CCCAACTCCTGTAACAAGACCTTGAACAAAGTAACCCAAGATTGCCAACA
TTGCCAATCTTCCATTCTTCACTTCCTTGAGCTTGAAATCCTTCATTGAC
TTCTCATCTTTCCCAAGACCCAGAGGGTTGAATAGAGGTCCTCCAGGGTA
AGCCGGATCGCCGGAACCTCCCAAGTATTTCTCGAATCCGAGGAAGTATT
GCCTGCCCATTGATCCTGGATTTGCCCAGTCTTGGAATCTCCGGTGCTCG
GCAAATCCCATGAGTGCCATTTCCAGGACGAAAAGTGTGTAAGGGTCTGC
CCAGTAGTTGTATGTTCCCGCTGGGGGGATCACACCGGTTTGGAACCAGG
CCAGGGCAGTTTCTTGCGGAATGAGGCCTGCCTTGCCAAGAATCTCCGGT
GCAATGGCTCCCACAGCTCCCAACATGGCATAACGACCGTTGATGACCTC
GCCGTAGGCCAGCCATTTTGGCTCAATGAACCCTCCTGTGCCTTCAGGGT
CTGAGAGACCAAGTGGGTCGAATCCATAGTCTCCGGGGAGGCTGCCATCC
AAGTATGAAAGGCTTTGTTTGGATGCAAACCACAACGGTCTGTCTGCTCC
TTGCTTAACAGGAGGAGTAGAAGCTGCCCTAACAACAAAGGAACCTTTTC
TTGATGAC
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