CN182159

Overview
NameCN182159
Unique NameCN182159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN182159 vs. ExPASy Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.577e-31
Identity = 53/72 (73.61%), Postives = 66/72 (91.67%), Query Frame = -1 
Query:  208 VNCFYFWPVLRHSASFPRIRHYVLGSAVGFAVFTVVLLSWALTFAIGGEHLFGSVWDKLVMYNVAERLGLTG 423
            VNCFYFWPVLRHS +FP+IR+YV+ SA+GF+VFT +L +WALTF+IGGE LFG ++DKLVMYNVA+RLGL+G
Sbjct:   73 VNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144

HSP 2 Score: 35.039 bits (79), Expect = 5.577e-31
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = -3 
Query:  446 GLTEDDSLSYARKFYQFGFA 505
            GLTE+ S+ YAR+FY+FGFA
Sbjct:   46 GLTEEASVDYARRFYKFGFA 65
The following BLAST results are available for this feature:
BLAST of CN182159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PEN2_ARATH5.577e-3173.61Probable gamma-secretase subunit PEN-2 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182159 ID=CN182159; Name=CN182159; organism=Citrus sinensis; type=EST; length=507bp
CCACGATACATTATTTTTCAGATAAAAGCATGAATCTGCCACTTGATTCA
ACAGGAAAGGTTCTTTTACTAATTGAGAAAAATGGCTTCAACATTACCTC
CAACATGAATGTATGTTGTTTCAAGTTTCAAAAACAGACTATATACAATG
ACAAGGGAAATGAGTTTTAAGACTCATAAGCTTGGAAATAGTTTATGACT
AGCTCCAACCTGTCAAGCCTAATCTCTCAGCAACATTATACATTACTAGT
TTATCCCAAACAGAGCCGAAGAGGTGCTCCCCTCCAATGGCAAATGTCAA
TGCCCATGAGAGTAAAACAACCGTGAAGACTGCAAACCCAACTGCTGATC
CAAGAACATAGTGGCGAATACGAGGGAAAGAGGCGGAGTGGCGAAGAACA
GGCCAGAAGTAGAAGCAATTGACAGCCCCAAAGAAACGGCAGCAGTGCGA
AACCGAACTGATAGAATTTGCGAGCGTAGCTCAATGAATCGTCTTCCGTT
AAACCCA
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