CN182158

Overview
NameCN182158
Unique NameCN182158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN182158 vs. ExPASy Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.098e-46
Identity = 83/115 (72.17%), Postives = 102/115 (88.70%), Query Frame = 3 
Query:   78 SITLSTPVWPTIDGPLGLTEDDSLSYARKFYQFGFALLPFLWAVNCFYFWPVLRHSASFPRIRHYVLGSAVGFAVFTVVLLSWALTFAIGGEHLFGSVWDKLVMYNVAERLGLTG 422
            +I  S  VWPTIDGPLGLTE+ S+ YAR+FY+FGFALLP+LW VNCFYFWPVLRHS +FP+IR+YV+ SA+GF+VFT +L +WALTF+IGGE LFG ++DKLVMYNVA+RLGL+G
Sbjct:   30 TIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144
The following BLAST results are available for this feature:
BLAST of CN182158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PEN2_ARATH3.098e-4672.17Probable gamma-secretase subunit PEN-2 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182158 ID=CN182158; Name=CN182158; organism=Citrus sinensis; type=EST; length=644bp
GAGAGAGAGGTCAAATGGACGCGTCACAGAGCAACGACCGGATTCCGAAT
CCGAACCCGAGGGGTAATAATGGGAACTCGATAACGTTGTCCACGCCGGT
GTGGCCAACGATCGACGGGCCGTTGGGTTTAACGGAAGACGATTCATTGA
GCTACGCTCGCAAATTCTATCAGTTCGGTTTCGCACTGCTGCCGTTTCTT
TGGGCTGTCAATTGCTTCTACTTCTGGCCTGTTCTTCGCCACTCCGCCTC
TTTCCCTCGTATTCGCCACTATGTTCTTGGATCAGCAGTTGGGTTTGCAG
TCTTCACGGTTGTTTTACTCTCATGGGCATTGACATTTGCCATTGGAGGG
GAGCACCTCTTCGGCTCTGTTTGGGATAAACTAGTAATGTATAATGTTGC
TGAGAGATTAGGCTTGACAGGTTGGAGCTAGTCATAAACTATTTCCAAGC
TTATGAGTCTTAAAACTCATTTCCCTTGTCATTGTATATAGTCTGTTTTT
GAAACTTGAAACAACATACATTCATGTTGGAGGTAATGTTGAAGCCATTT
TTCTCAATTAGTAAAAGAACCTTTCCTGTTGAATCAAGTGGCAGATTCAT
GCTTTTATCTGAAAAATAATGTATCGTGGCATGTATTTTTTCCT
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