CN182153

Overview
NameCN182153
Unique NameCN182153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182153 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.700e-71
Identity = 130/185 (70.27%), Postives = 155/185 (83.78%), Query Frame = -3
Query:  153 ANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 701
            ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A+A +PGA I NFTN
Sbjct:   70 SSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of CN182153 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.075e-69
Identity = 126/186 (67.74%), Postives = 152/186 (81.72%), Query Frame = -3
Query:  153 SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 707
            SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct:   68 SQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
BLAST of CN182153 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.968e-69
Identity = 126/182 (69.23%), Postives = 150/182 (82.42%), Query Frame = -3
Query:  153 SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 692
            +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   V+P+P AKA EP   I NFTN
Sbjct:   77 TENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
BLAST of CN182153 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.027e-68
Identity = 123/182 (67.58%), Postives = 150/182 (82.42%), Query Frame = -3
Query:  153 SSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 695
            ++++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NFTN
Sbjct:   73 NTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
The following BLAST results are available for this feature:
BLAST of CN182153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH5.700e-7170.27Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.075e-6967.74Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC3_ARATH6.968e-6969.23Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC1_ARATH2.027e-6867.58Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182153 ID=CN182153; Name=CN182153; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTAAAAAAACAACCTCCCACCTTGTTATTTGGCCA
TCACCATCTTCATCATCATATCACTAGAGCCAATATGCTTGCACACATTA
TTCACTTGACTAAAAAACAACCCAATTAAAGATGTCCTCATATCCCTAAC
TAATTAGTGAAATTGTCAATGGCTGCACCAGGCTCACAAGCCTTAGCAGC
AGGGGAGGGCTCAACACCAGGGTGCGGATCCACCGGCTTCCCCAGAAGCA
CTTCTGGCAAGTCCTTAATGCCCTTCAAATAAAATGTGTAAAACAGCTTA
AATGGAAACACAAGTTGCTGCAGCTTAACCTGCCCATACACTCCCTCGAA
GATGCCGGATCCACCAGTCACAGCCAGATAAGTGTCCTCATAGGTCAAAT
ACGGTCCTTGCACAGCTATGTGACCATAGTCTCCAAAGTAGAAGCTGTAA
ATTGCTTCATATCGGTCACCTTTCTTTTCTGGTTTGTTTTCGATCAAAAT
GCATAAACCCGCTGTTATTCCCAACCTCTTTTGCAGGTCTCCAGTATATA
ATTTGTTGCTAAAAGGGACAAGATCACCAAGTGAATTCACAGGTTTCTGG
CTCAAGCGAAGATAAGCTGGACTGCCACGATCTCGCTCGTTGATCTCATA
CACATGAAGTTCTTGAACTTTGGTGGGTCTGGGATCATCTGATGAGTTAG
CTTGGCTTCTGC
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