CN182139 | Citrus Genome Database

Overview


Name	CN182139
Unique Name	CN182139
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	547

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

[Close]

BLAST of CN182139 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   97 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 324
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1

Query:  325 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQK 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ+
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42

HSP 3 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2

Query:  401 LRQRFRTRKGFHQISRRLIFAGKQLEDGRTLADYNIQKESTLHLGLRLR 547
            ++ + + ++G     +RLIFAGKQLEDGRTLADYNIQKESTLHL LRLR
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74

The following BLAST results are available for this feature:

BLAST of CN182139 vs. ExPASy Swiss-Prot

BLAST of CN182139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_WHEAT	4.609e-36	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	4.609e-36	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	4.609e-36	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	4.609e-36	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	4.609e-36	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	4.609e-36	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	4.609e-36	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	4.609e-36	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	4.609e-36	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	4.609e-36	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0002A04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN182139 ID=CN182139; Name=CN182139; organism=Citrus sinensis; type=EST; length=547bp
GAGGCCGGTAAGCAGTTGGAAGATGGCCGCACCTTGGCCGATTACAACAT
TCAGAAAGAGTCAACTCTCCACCTTGTTCTTCGTCTCAGGGGAGGCATGC
AGATATTTGTTAAGACCCTTACTGGGAAAACAATTACTTTGGAAGTTGAG
AGCTCAGACACAATTGACAATGTCAAGGCAAAAATCCAAGACAAGGAAGG
AATTCCACCGGATCAGCAGCGTTTGATCTTCGCTGGCAAACAGCTTGAGG
ATGGAAGGACTCTTGCGGATTATAACATCCAGAAGGAGTCGACCCTTCAT
CTGGTTCTGCGCCTGAGGGGTGGTATGCAGATATTTGTCAAGACCTTGAC
TGGGAAGACTATTACTCTGGAGGTGGAGAGCTCAGATACTATTGATAATG
TTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAAG
GCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATT
ATAACATTCAGAAGGAGTCCACCCTCCATCTTGGGCTCCGCCTTCGT