CN182122

Overview
NameCN182122
Unique NameCN182122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13424 contig Csv1_Contig13424:16..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS2_PARAR (Farnesyl pyrophosphate synthetase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.385e-55
Identity = 101/133 (75.94%), Postives = 119/133 (89.47%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            +L+KHVEVK++LV+MG YFQVQDD+LDCFG+PEVIGK+GTDIED+KCSWLVVKALEL NEEQKK++HENYGK DP+ VAKVKELY TL+L+G F +YE  SY+KL  SIE HP+K VQAVLKSFL KIY+RQK
Sbjct:  210 DLEKHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELANEEQKKVLHENYGKKDPSPVAKVKELYNTLNLQGVFEDYENTSYKKLITSIEGHPSKAVQAVLKSFLGKIYRRQK 342
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS2_ARATH (Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.385e-55
Identity = 101/133 (75.94%), Postives = 117/133 (87.97%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            NL+ H +VK +LV MGIYFQVQDD+LDCF  PE +GK+GTDIED+KCSWLVVKALE C+EEQ K+++ENYGK +P+ VAKVK LYK LDLEGAF+EYEKESYEKLTK IEAH +K +QAVLKSFLAKIYKRQK
Sbjct:  210 NLENHTDVKTVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKAEPSNVAKVKALYKELDLEGAFMEYEKESYEKLTKLIEAHQSKAIQAVLKSFLAKIYKRQK 342
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS1_PARAR (Farnesyl pyrophosphate synthetase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.362e-55
Identity = 101/133 (75.94%), Postives = 118/133 (88.72%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            +L+KH EVK++LV+MG YFQVQDD+LDCFG+PEVIGK+GTDIED+KCSWLVVKALEL NEEQKK++HENYGK DP+ VAKVKELY TL+L+G F +YE  SY+KL  SIE HP+K VQAVLKSFL KIYKRQK
Sbjct:  210 DLEKHEEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELSNEEQKKILHENYGKKDPSSVAKVKELYHTLNLQGVFEDYENTSYKKLITSIEGHPSKAVQAVLKSFLGKIYKRQK 342
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS_ARTAN (Farnesyl pyrophosphate synthetase OS=Artemisia annua GN=FPS1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.871e-55
Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            +LDKHVEVK++LV+MG YFQVQDD+LDCFG+PEVIGK+GTDIED+KCSWLVVKALEL NEEQKK +HENYGK DPA VAKVKE+Y TL+L+  F +YE  SY+KL  SIE HP+K VQAVLKSFL KIYKRQK
Sbjct:  211 DLDKHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELPNEEQKKTLHENYGKKDPASVAKVKEVYHTLNLQAVFEDYEATSYKKLITSIENHPSKAVQAVLKSFLGKIYKRQK 343
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS1_ARATH (Farnesyl pyrophosphate synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.611e-54
Identity = 97/133 (72.93%), Postives = 117/133 (87.97%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            NL+ H++VK++LV MGIYFQVQDD+LDCF  PE +GK+GTDIED+KCSWLVVKALE C+EEQ K+++ENYGK DP+ VAKVK+LYK LDLEG F+EYE +SYEKLT +IE H +K +QAVLKSFLAKIYKRQK
Sbjct:  252 NLENHIDVKNVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKPDPSNVAKVKDLYKELDLEGVFMEYESKSYEKLTGAIEGHQSKAIQAVLKSFLAKIYKRQK 384
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS1_LUPAL (Farnesyl pyrophosphate synthetase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.410e-54
Identity = 99/133 (74.44%), Postives = 116/133 (87.22%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            NLD H++VK+ILV MG YFQVQDD+LDCFG+PE IGK+GTDIED+KCSWLVVKALEL N+EQKK++++NYGK DPA VAKVK LY  L+L+G F EYE +SYEKL  SIEAHP+K VQA+LKSFL KIYKRQK
Sbjct:  210 NLDNHIDVKNILVDMGTYFQVQDDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALELSNDEQKKVLYDNYGKPDPANVAKVKALYDELNLQGVFTEYESKSYEKLVTSIEAHPSKAVQALLKSFLGKIYKRQK 342
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS2_LUPAL (Farnesyl pyrophosphate synthetase 2 OS=Lupinus albus GN=FPS2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.296e-53
Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            NLD H +VK+ILV+MG YFQVQDD+LDCFG+PE IGK+GTDIED+KCSWLVVKALEL NEEQKK+++ENYGK DPA VAKVK LY  L+LEGA+ +YE +SYEKL   IE HP+K VQ VLKSF AKIYKRQK
Sbjct:  210 NLDNHTDVKNILVEMGTYFQVQDDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALELSNEEQKKVLYENYGKPDPANVAKVKTLYNELNLEGAYADYESKSYEKLVTCIEGHPSKAVQGVLKSFWAKIYKRQK 342
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS_HELAN (Farnesyl pyrophosphate synthetase OS=Helianthus annuus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.924e-53
Identity = 100/133 (75.19%), Postives = 116/133 (87.22%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            +LD HVEVK++LV+MG YFQVQDD+LDCFG+PEVIGK+GTDIED+  SWLVVKALEL NEEQKK++HENYGK DP+ VAKVKELY TL+L+G F +YE  SY+KL  SIE HP+K VQAVLKSFL KIYKRQK
Sbjct:  210 DLDNHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFS-SWLVVKALELANEEQKKVLHENYGKKDPSSVAKVKELYNTLNLQGVFEDYESTSYKKLITSIEGHPSKAVQAVLKSFLGKIYKRQK 341
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: FPPS_MAIZE (Farnesyl pyrophosphate synthetase OS=Zea mays GN=FPS PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.135e-49
Identity = 94/133 (70.68%), Postives = 109/133 (81.95%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            NLD + +V++ILV+MG YFQVQDD+LDC+G PE IGK+GTDIEDYKCSWLVV+ALE  +E QK+++ ENYGK DPACVAKVK LYK LDLE  F EYE ESY+KL   IEA P+  VQ VLKSFL KIYKRQK
Sbjct:  218 NLDNYGDVENILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADESQKRILFENYGKKDPACVAKVKNLYKELDLEAVFQEYENESYKKLIADIEAQPSIAVQKVLKSFLHKIYKRQK 350
[Close]
BLAST of CN182122 vs. ExPASy Swiss-Prot
Match: CPPAS_TANCI (Chrysanthemyl diphosphate synthase, chloroplastic OS=Tanacetum cinerariifolium PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.074e-43
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = -2 
Query:  282 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 680
            NL+ HV+VKDILV++G+Y+Q+Q+D+LD FG P+V GK GTDIE+ KCSWL+ KALEL NEEQKK++ ENYG  DP+ VAKVKELY  LDL+GA+ +YE   YE    SI+AHP   VQAVLKS L K+YK  K
Sbjct:  263 NLEDHVQVKDILVELGMYYQIQNDYLDTFGDPDVFGKTGTDIEECKCSWLIAKALELANEEQKKILSENYGINDPSKVAKVKELYHALDLKGAYEDYETNLYETSMTSIKAHPNIAVQAVLKSCLEKMYKGHK 395
The following BLAST results are available for this feature:
BLAST of CN182122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS2_PARAR1.385e-5575.94Farnesyl pyrophosphate synthetase 2 OS=Parthenium ... [more]
FPPS2_ARATH1.385e-5575.94Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis... [more]
FPPS1_PARAR2.362e-5575.94Farnesyl pyrophosphate synthetase 1 OS=Parthenium ... [more]
FPPS_ARTAN6.871e-5576.69Farnesyl pyrophosphate synthetase OS=Artemisia ann... [more]
FPPS1_ARATH2.611e-5472.93Farnesyl pyrophosphate synthetase 1, mitochondrial... [more]
FPPS1_LUPAL3.410e-5474.44Farnesyl pyrophosphate synthetase 1 OS=Lupinus alb... [more]
FPPS2_LUPAL1.296e-5374.44Farnesyl pyrophosphate synthetase 2 OS=Lupinus alb... [more]
FPPS_HELAN4.924e-5375.19Farnesyl pyrophosphate synthetase OS=Helianthus an... [more]
FPPS_MAIZE1.135e-4970.68Farnesyl pyrophosphate synthetase OS=Zea mays GN=F... [more]
CPPAS_TANCI2.074e-4363.16Chrysanthemyl diphosphate synthase, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182122 ID=CN182122; Name=CN182122; organism=Citrus sinensis; type=EST; length=681bp
CCCCCTTTTTTGGGCCCTTAATTGTAATCCCTAANAAAAATATAATTATT
CAATCAGTATGCTTCAATTTCACAACAATATCCCAGAAATTCACCTGGCC
ATGAAAGGTACTGGCTGATCAGATGAATATGGGAGTTAATACAATGAGAA
TCAACAGTCCACTAAATGTAAAAAGAAAATACAGAGATTATTTTTCTCCA
TCTGGAGATTAAAAATGCTAAGTAGGTGAGAAGATTTGGACATCTACTCT
GTCCAATTTGCTTCATCTTTTGAAGCTCTCACTTCTGTCTCTTGTATATC
TTTGCCAAGAATGATTTTAGCACGGCTTGAACTTCCTTAGTAGGATGAGC
TTCAATGGATTTTGTCAGCTTTTCGTAACTCTCTTTCTCATACTCCACAA
ATGCGCCCTCAAGATCAAGAGTTTTATAAAGCTCTTTCACTTTTGCAACG
CAGGCTGGATCTACCTTTCCATAGTTCTCATGGACCAATTTCTTTTGTTC
CTCGTTACAAAGTTCCAGAGCTTTTACAACCAACCAAGAACACTTGTAAT
CTTCAATATCAGTTCCAACCTTGCCAATAACTTCAGGAGAACCAAAACAA
TCCAGAAAATCATCCTGTACTTGAAAATAGATACCCATTTGAACTAAGAT
GTCCTTGACCTCAACATGTTTGTCAAGATTC
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